barSeed - Barley Seed Development Database

Probe CUST_21634_PI390587928

Source Contig U35_42883

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21634_PI390587928	Hv_44K_v2	CTTACAGGAATGTTGGTGGTGATTCACAAAGGAATGAATTTCACCAGAAAATTCCGAGCA	578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59092.4	2920	2e-24	2110 - 2169	100	60 / 60	plus	ABC12931
MLOC	MLOC_59092.2	2955	2e-24	771 - 830	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.3	2971	2e-24	771 - 830	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.6	3084	2e-24	706 - 765	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.5	1462	2e-24	775 - 834	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.1	3136	2e-24	778 - 837	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.7	3109	2e-24	674 - 733	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.8	2879	2e-24	672 - 731	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.9	2969	2e-24	771 - 830	100	60 / 60	minus	ABC12931
JLOC1	JLOC1_38430.7	3236	8e-25	2222 - 2281	100	60 / 60	plus
JLOC1	JLOC1_38430.6	3228	8e-25	2214 - 2273	100	60 / 60	plus
JLOC1	JLOC1_38430.5	3150	8e-25	2136 - 2195	100	60 / 60	plus
JLOC1	JLOC1_38430.4	3157	8e-25	2143 - 2202	100	60 / 60	plus
JLOC1	JLOC1_38430.3	3135	8e-25	2121 - 2180	100	60 / 60	plus
JLOC1	JLOC1_38430.2	3138	8e-25	2124 - 2183	100	60 / 60	plus
JLOC1	JLOC1_38430.1	3134	8e-25	2120 - 2179	100	60 / 60	plus
Harvest21	ABC38852	638	3e-25	579 - 638	100	60 / 60	plus
Harvest35	U35_42883	638	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_42883 638 Hv_44K_v2
GGCTTCTAACAATAAGCTTGGTCCAGAGAGCAAGGAGCAGTTATCACAGAAAGAATACAT
AAGGGGTATCAGTGGCTGGAATTTTAATCTGGAGGACTTGAAAACCGCAGCTGCCCTTTT
AGACAGTTCAAATGGCACATATAATTTTGATGGTGCCAACAACAAAGAGAGGGATGGGTT
ACAAGATGTTTATTATAATGAAGCAGAAAATATTTATCAGGAAAGGGTCAACCATGGTGC
TTCTGCAAGGCATGAAGAGCAGCATGAGATACAAGAGGTTGAAGATTTGGATGGAGATCT
TGCCTCTTCTTTTCCAACCCGTCCCCTTGAGGCACTAAAGTCTTGCTTTGATGTTGGTGA
TGCTGATGATCCGGACCCTGCTACTACGAATTCGCGGGTGCAACCAAGCATGGAATCTAT
ATCGCCTGTGCAGCAGTTCCCAGAAATGGATCATAGTAGAAGTGACGATTGTAACGGTGA
AAATCTGGAAAGAAGTGTTTCCGTACCCTCAAATTTGGGAAATAATGTATGTCACAAGTT
CTCAAGTGGTTCTTTAATCCCCGAGCACGTTCTTTCGCCTTACAGGAATGTTGGTGGTGA
TTCACAAAGGAATGAATTTCACCAGAAAATTCCGAGCA

Homology of Contig U35_42883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g29120.2	694	5e-89	protein\|STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi1g42257.1	662	2e-106
Arabidopsis v10	None