barSeed - Barley Seed Development Database

Probe CUST_2162_PI390587928

Source Contig U35_11015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2162_PI390587928	Hv_44K_v2	AAAGACCTATTAAAGAGGGAGCTTAGGAAAAAGGATGTTCTTGTGGAAGAAATGGTGTGT	725	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.918	1.878	1.155	1.008	0.563	0.578
Raw	321.962	516.652	270.179	373.764	71.970	80.663

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11500.1	1509	2e-24	112 - 171	100	60 / 60	minus	ABC16080
MLOC	MLOC_11500.2	1185	2e-24	112 - 171	100	60 / 60	minus	ABC16080
MLOC	MLOC_11500.3	1063	2e-24	112 - 171	100	60 / 60	minus	ABC16080
JLOC1	JLOC1_7622.2	1094	8e-25	848 - 907	100	60 / 60	plus
JLOC1	JLOC1_7622.1	1202	8e-25	956 - 1015	100	60 / 60	plus
Harvest35	U35_11015	810	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (810 bp)

>U35_11015 810 Hv_44K_v2
CTACGTTCCGGTGCTCCTTCACCTCTATTAGACTGCTGCGCCTCCGCCCTGAGCGCCGTC
CCCTCTCGACCCCGGCCCTCCGCTACGCTACACGCGATTCTGCGAGCTTGCCGTCAACAT
GTCACGGCAAGCAGGAGCACCAGGGGTTTTACACAATGGCTCATTTCAAGAACAGGTACA
TGGTGATGGAGGTTTTCTTCGACGCTAGCAGAGGAGAGGCTGATCCTGTCATCCTCACCC
AGTTCAACATAACCAAAGTGATCAGAGATAGCATCCAGCCCAACTTTGGGGAATGTGGTC
TAGCTGCATCTCTTGGATCATTGCAAGTGAAGTATGTAAATCCTGTGACGAAGCTTTGCG
TAATCCGAATGTCGCGTGAAGATCACCAGAAAGTGTGGGCTGCTATCACAATGGTCAGGA
GCATTGGGAAGATCCCAGTGTCGTTCAACCTCTTGGACGTGAGTGGAAGTATCAGGGCCT
GCAAGAAAGCCGCGCTGGAGTGCGAAGAAGCGAAGTTTGAGCAGTACAAGCTGGCTGCTG
GTGACCGCATGACGTAGGAGATTATCGAATCCGTTCAGGGTTGCTTTGGCGAACTTAAAG
GATTAGACAGTTAGTAAATTAAAGTTTGCCCCATGCCAGCAGTTTGAAAAAGAACCTATA
ATCTAGACAAACGGCATTGTCGTTGCTCGGTCCAAGGGTGCAACACGGCGGCATCCATCC
CCAAAAAAGACCTATTAAAGAGGGAGCTTAGGAAAAAGGATGTTCTTGTGGAAGAAATGG
TGTGTAGCTAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_11015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g22870.1	396	5e-60	protein\|rpp14 family protein, expressed
Brachypodium v1_2	Bradi5g00600.1	153	3e-76
Arabidopsis v10	None