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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_21628_PI390587928Hv_44K_v2AGAATGCTGTACCTCTGCTTGATAATCCAGAAATCCTGGCCAGTCCAAAGCTAAACATAG318GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1831.5271.5981.1570.2800.352
Raw 126.175257.981231.782272.41222.44630.983



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36073248852e-242474 - 253310060 / 60plus ABC16752
MLOCMLOC_54055.117162e-241436 - 149510060 / 60plus None
MLOCMLOC_54055.316482e-241399 - 145810060 / 60plus None
MLOCMLOC_54055.238512e-241431 - 149010060 / 60plus ABC16752
MLOCMLOC_54055.418642e-241319 - 137810060 / 60plus None
JLOC1JLOC1_34776.238688e-251306 - 136510060 / 60plus
JLOC1JLOC1_34776.138138e-251347 - 140610060 / 60plus
Harvest21ABC275635863e-25319 - 37810060 / 60plus
Harvest35U35_285935863e-25319 - 37810060 / 60plus



Contig Sequence (586 bp)

>U35_28593 586 Hv_44K_v2
GGGAAAGAAGAAAAGTTCTACTTGTAGAACACCCAAATCGGAAAGCGGCCGGGAAGAACG
CTCATTCTGCAAGGAGCATGTGTACAAATAATAGCAGACCATTATCTGCAGATGATATCC
AAAAAGCAAAGAAGCGTGCCATGTTTATGCAGGAGAAGTATGGCAAGGTTGACACAAGTA
AAGTGTCTGATAAACCTGAGACGACAGAAAATAAAAAACCATCTGGCTTGGTCAACTCAA
ATGTGCCTCCTATGCCCACAAGCCCCCTCACATCAACTGCTAAACAACCTGTTGACCCAA
GCCCATCAACTTCTATACAGAATGCTGTACCTCTGCTTGATAATCCAGAAATCCTGGCCA
GTCCAAAGCTAAACATAGCTCCCAGAGAGACCCCCATAGAGAAATTGGATTCCAAGAGGG
TTCGTTGGCAGATACCACCAGAGGTGTGGATAGACCCCTTGTGGAGTGTTAGTGCTGGGG
AAAACAGCAAGGAGGTTGACGTTCAGGCACAGAGAAATCGACGCGAGAAGGAAACCTTTT
ATGCAAGTCCAAAGGACATCCCGTCGAATCCCAAGGACCCATGGGA



Homology of Contig U35_28593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g70810.111693e-90protein|homeobox domain containing protein, expressed
Brachypodium v1_2Bradi2g59937.111723e-93
Arabidopsis v10None