- Probe CUST_21627_PI390587928
- Source Contig U35_42887
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21627_PI390587928 | Hv_44K_v2 | AATGTGCCTGGTTCTTCTTCTCAGCTATTCTGCACCTCACCAAGTTCTATTGCAACATAT | 555 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.908 | 1.141 | 1.876 | 2.007 | 0.662 | 0.702 |
| Raw | 146.955 | 290.866 | 412.315 | 704.478 | 82.451 | 96.561 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363628 | 4446 | 2e-24 | 3390 - 3449 | 100 | 60 / 60 | plus | ABC12223 |
| MLOC | MLOC_15442.4 | 3694 | 2e-24 | 892 - 951 | 100 | 60 / 60 | minus | ABC12223 |
| MLOC | MLOC_15442.1 | 3634 | 2e-24 | 734 - 793 | 100 | 60 / 60 | minus | ABC12223 |
| MLOC | MLOC_15442.3 | 4008 | 2e-24 | 1079 - 1138 | 100 | 60 / 60 | minus | ABC12223 |
| MLOC | MLOC_15442.2 | 2785 | 2e-24 | 1083 - 1142 | 100 | 60 / 60 | minus | ABC12223 |
| JLOC1 | JLOC1_10595.1 | 4069 | 8e-25 | 1170 - 1229 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC38859 | 615 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42887 | 615 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus |
Contig Sequence (615 bp)
>U35_42887 615 Hv_44K_v2 GTGGGCAGAAGAGGGTGTGCCTATGAAATATATCCCAGGAAGGGTGAGGTGTGGGCTCTT TATAAGGGTTGGAGTATGCAGTGGTGTTCAGATGCAGATAACCATAAGACATACGAGTAC GAAGTTGTGGAGGTTCTGTCAGACTTCACGACGGAAGCTGGAGTTGCTGTTTTTCCCTTG GTCAAGATTAAAGGGTTTGTCAGTCTATTTGGAAAAGCAATTGATAGATCATCTTTTGTT ATACCATCTAGTGAACTGCTTCGATTCTCGCACAATATCCCATTTTATAGGACAAAAGGA AATGAAAAGGTTGGTGTGGCAGGTGGGTTTCTTGAGCTTGATACCGTGTCACTTCCTAGT AACCTGGACACATCGTTTTTATCAGTTACTATCGACAAGACAATTAGCAGTGGTTTCATT GACGCCAGTGATATTAGTACACCAGGTCCTGGAAATGAACCAAGTGCTCAAAAGGAAAAT CAGCAAAGTGGAGGAAAACGGATAGATGATTCCCTTGAACGAACCCCAAGACAGAAGCAG AAAGGCGGCACTGCGAATGTGCCTGGTTCTTCTTCTCAGCTATTCTGCACCTCACCAAGT TCTATTGCAACATAT
Homology of Contig U35_42887 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g27740.2 | 1009 | 9e-73 | protein|dnaJ domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g76707.1 | 977 | 1e-100 | |
| Arabidopsis v10 | None |