barSeed - Barley Seed Development Database

Probe CUST_21616_PI390587928

Source Contig U35_42894

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21616_PI390587928	Hv_44K_v2	TGCAGGCGCTGTCCAACGCCGTCCTACGGAGGAAGGTTGGGTTGGTATATGTCTTCTATG	528	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13243.2	2928	2e-24	826 - 885	100	60 / 60	plus	ABC38872
MLOC	MLOC_13243.1	3276	2e-24	868 - 927	100	60 / 60	plus	ABC38872
JLOC1	JLOC1_8941.1	3250	8e-25	826 - 885	100	60 / 60	plus
Harvest21	ABC38871	647	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_42894	647	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_42894 647 Hv_44K_v2
GCTCCAGCTCCCAGGAGGCCGTCTGCGGCAACAAGTACCTCTTCCGCGACGGCGAGGACT
CGCGCAACGTCTGCGGCATTCCGTGGAACTGGTCGCGCCTCCACCACCGCGGCAAGTCTA
TCCTCGACTTGGCCGGCCGCAGCCTATCGTGCGGGCTCTCCGACCCCAAGTCCGCCGAAC
CTGAAGCAGCGGCCGCCGCCTCGCGCGCGCACCGCAGCGGTTCACACTCTCTTTTCCCGG
TCAAGTCCGAGAGGTTGGCTTCCTCCACCGGCTCCGACTCTGACGCTTTGCCTCTGCTCG
TCGAGGCCGCCACCTCCGGGGCACGCAGTGGCATTGGACGCATGACCGGGAGCTACTCCG
GGGAGCTCGGGCTATTCTCCAACCGGAGCAGCGAGATGGACTCTGACCTCTTGTCCGAGG
CGCGCTCTGGGACACGGGGCTCTCTGCGAAGCCGCAGCCGGCACCGGAGCCTGACACAGA
AGTTCGCGCCGAGGACGTTCAAGGACGTGGTCGGACAGAGCTTGGTGGTGCAGGCGCTGT
CCAACGCCGTCCTACGGAGGAAGGTTGGGTTGGTATATGTCTTCTATGGGCCGCACGGCA
CGGNGAAGACATCTTGCGCGCGCGTCTTCGCCAAGGCGCTCAACTGC

Homology of Contig U35_42894 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53070.1	1073	8e-89	protein\|ATP binding protein, putative, expressed
Brachypodium v1_2	Bradi2g48930.2	1064	1e-91
Arabidopsis v10	None