barSeed - Barley Seed Development Database

Probe CUST_21615_PI390587928

Source Contig U35_42895

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21615_PI390587928	Hv_44K_v2	TTGAAAGCCAACAGAGTCTGTACCAGAGGCTTCACTAATAAATGGTTTCTAGTCAGCAAA	14	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.968	1.839	1.394	0.865	0.258	0.328
Raw	557.108	1626.859	1056.139	1061.275	110.022	150.239

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13243.1	3276	2e-23	3194 - 3251	100	58 / 58	plus	ABC38872
JLOC1	JLOC1_8941.1	3250	1e-23	3152 - 3209	100	58 / 58	plus
Harvest21	ABC38872	594	3e-25	15 - 74	100	60 / 60	minus	ABC38872
Harvest35	U35_42895	594	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (594 bp)

>U35_42895 594 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCTGACTAGAAACCATTTATTAGTGAAGCCTCTGGTACAGACT
CTGTTGGCTTTCAAAAAGAATTACAACGCATATTTGACAGAAAAGAATTTGCTAGGCCAT
TTCTATCTTTCTTTTACATGACAAACAATATACAGATTAGAGAAAACCTAAAAATTGACA
CAGCTACAGGCCTACAGCCTACAAGGTACAGAGTGAATAAATTATGGATGCTAAATTAAA
CGCTTGTAAAGCTACCACTTCTAGTGTCTTTTCATCTTGGGGATTTTGTGGAGATGCATC
TTCCACACAGGATAAGCCGCGATATAGCTTGTGACCGTGACCTTCCAGTCCTGACCCTAA
ACGATGAGAGCTTCCGTCGAGTCTTTGATGTTCTCCAACAAAGTATATTCCTCGATCTAG
GTTCTAATCTCAAATTCTCTTGTTCCAGTTTTTCTGCAATAGACATAGCTTTTCGTCTAG
ACCAGCCTCCTCGTTGAGAACAAACCTCTGCCTTACTGAGAACATGAGCAAGTGAGAGCT
TTCGTTTTACTATGCTATTCTGTCGACGCTGNTTATTCCCATTTTTCCCTCCTT

Homology of Contig U35_42895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g48930.2	1064	2e-51
Arabidopsis v10	None