barSeed - Barley Seed Development Database

Probe CUST_21609_PI390587928

Source Contig U35_1801

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21609_PI390587928	Hv_44K_v2	TTTCATCAGCTCCATTCGATTCGAGTCATGTTATAAGGAAAATGTCAACTTGATTCACAG	2911	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.954	2.311	1.121	0.929	0.539	0.689
Raw	648.970	1303.313	527.139	724.144	137.241	193.340

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54544.1	3722	2e-24	3151 - 3210	100	60 / 60	plus	ABC05703 ABC07032
MLOC	AK365575	2905	3e-21	2691 - 2750	97	58 / 60	plus	ABC05703 ABC07032
JLOC1	JLOC1_35110.1	3616	8e-25	3112 - 3171	100	60 / 60	plus
Harvest21	ABC07032	2799	3e-25	2695 - 2754	100	60 / 60	plus	ABC07032
Harvest35	U35_1801	2995	3e-25	2912 - 2971	100	60 / 60	plus

Contig Sequence (2995 bp)

>U35_1801 2995 Hv_44K_v2
CGCGTTGAAACGGATGGCTCCAAGAAGGGCATCGGTCACGGGCTGGGTAGAGTACAAACC
ACAAATTGCGAGAAGAGTGGAGGCCGGGGCAAAGCGACGGCGAAAACAAAGCCTCGCCAC
CGCCGTCCCCGTCACGGGCCGCTCCAGCTCACGCCCACGCCCACGCTCTAGCGCAACCAC
CACCACTCTATATATCGCCAGTACCAGTGCCAGTGCCTCGCCGCAGGGGAGGGGAGAGCC
AGAGCACGCACGCTCGCACGCTAGCCAGCCAGCAGCAATGGCGACGGCGGCGCGCCCACC
GTTCCTGGCCATGGCCGCGGCGGCGCTGCTGGTGGCGGCGTGGTGGGGCGGCAATGCGGG
GACGGCGGAGGCGCAGGCGCCGGTGTTCGCGTGCGACGCGTCGAACGCGACGCTGGCGGC
CTACGGGTTCTGCAACCGGAAGGCGACGGCGTCGGCGCGCGCCAGGGACCTGGTGTCGCG
GCTGACGCTGGCGGAGAAGGTGGGGTTCCTGGTGAACAAGCAGCCGGCGCTGGGCCGGCT
GGGCATCCCGGCGTACGAGTGGTGGTCCGAGGCGCTGCACGGCGTGTCCTACGTCGGCCC
CGGCACCCGCTTCTCGCCGCTCGTGCCCGGCGCCACCAGCTTCCCGCAGCCCATCCTCAC
CGCCGCCTCCTTCAACGCCTCCCTCTTCCGCGCCATCGGCGAGGTGGTGTCGACGGAGGC
GCGGGCGATGCACAACGTGGGGCTGGCGGGGCTGACGTTCTGGAGCCCAAACATCAACAT
CTTCAGGGACCCGCGGTGGGGCCGGGGCCAGGAGACGCCCGGCGAGGACCCGCTGCTGGC
CAGCAAGTACGCCGTGGGATACGTCACGGGGCTCCAGGACGCCGGCGCCGGCGGCGTCAC
CGACGGCGCGCTCAAGGTCGCCGCCTGCTGCAAGCACTACACCGCCTACGACGTCGACAA
CTGGAAGGGCGTCGAGCGATACACCTTCGACGCAAAGGTGTCGCAGCAGGACCTGGACGA
CACGTTCCAGCCGCCGTTCAAGAGCTGCGTGCTGGACGGCAATGTGGCCAGCGTCATGTG
CTCCTACAACAAGGTGAACGGGAAGCCCACCTGCGCCGACAAGGACCTCCTGGAGGGAGT
CATCAGGGGGGACTGGAAGCTCAATGGATACATCGTGTCGGACTGCGACTCCGTCGACGT
GCTCTACACCCAGCAGCACTACACCAAGACGCCCGAGGAGGCCGCCGCTATCACCATCAA
ATCAGGGCTGGACCTCAACTGCGGCAACTTCCTGGCGCAGCACACGGTGGCGGCGGTGCA
GGCCGGCGAGCTCTCAGAGGAGGATGTCGACCGGGCCATCACCAACAACTTCATCATGCT
CATGCGCCTGGGCTTCTTTGACGGCGACCCCCGGCAGCTCGCCTTCGGCAGCCTCGGCCC
CAAGGACGTGTGCACGTCTTCCAACCGGGAGCTGGCACGCGAGACGGCGCGCCAGGGCAT
CGTGCTCCTCAAGAACAGCGGCGCGCTGCCGCTCTCGGCAAAGTCCATCAAGTCCATGGC
CGTCATTGGGCCCAACGCCAATGCCAGCTTCACCATGATCGGCAACTACGAAGGCACACC
GTGCAAGTACACGACGCCGCTCCAGGGCCTGGGCGCCAAGGTCAACACCGTGTACCAGCC
GGGGTGCACCAACGTCGGGTGCAGCGGGAACAGCCTACAGCTCAGTACCGCCGTGGCGGC
CGCAGCCAGTGCCGACGTGACCGTGCTCGTCGTCGGCGCCGACCAGTCCATTGAGCGCGA
GAGCCTGGACAGGACGAGCCTCCTCTTGCCGGGCCAGCAGACCCAGCTCGTGTCGGCCGT
CGCCAACGCCTCCAGCGGGCCTGTCATCCTCGTCGTCATGTCGGGTGGACCATTCGACAT
CTCGTTCGCCAAGGCCAGCGACAAGATCGCTGCCATTCTTTGGGTCGGCTACCCCGGCGA
AGCCGGCGGCGCCGCCCTCGCCGACATCCTCTTCGGCAGCCACAACCCAAGTGGGAGGCT
GCCGGTGACGTGGTACCCGGCGTCGTACGCCGACACGGTCACCATGACCGACATGCGGAT
GCGGCCGGACACGTCGACGGGCTACCCGGGCCGGACGTACCGGTTCTACACGGGCGACAC
GGTGTTCGCCTTCGGGGACGGCCTGAGCTACACCAAGATGTCACACAGCCTCGTGTCGGC
GCCGCCGTCGTACGTGTCCATGCGGCTGGCCGAGGACCACCCGTGCCGCGCCGAGGAGTG
CGCGTCGGTGGAGGCCGCCGGCGACCACTGCGACGACCTGGCGTTCGACGTCAAGCTCCA
GGTGCGGAACGCCGGCGAGGTGGCCGGCGCGCACTCGGTGCTGCTGTTCTCGTCGCCGCC
GTCGGCCCACAACGCGCCGGCGAAGCACCTGCTCGGGTTCGAGAAGGTGTCGCTGGCGCC
CGGGGAGGCCGGCACGGTGGCGTTCCGGGTGGACGTGTGCAGGGACCTGAGCGTGGTGGA
CGAGCTGGGCGGCCGCAAGGTGGCGCTCGGCGGCCACACGCTGCACGTCGGCGACCTCAA
GCACACCGTGGAACTGCGAGTCTGATGATCGACGGTGATCAGAAAAATTCCACGTAGGGA
GGATCGATTTCATTTGATAGGGGAAAAAGAAGATGGAATTGGATGGGCCGACCGGGGTAA
TGGGCCGTAGGAATTGATTTAAGGGAGGTGAAATAACCAAATGGGCCTTTCGTTGGGACA
AGAAAGAATTGGATCCACGGGAGGCTTTGGGAGTTGTTTTGTTGCGGTTGTTAAATTTGA
TTTTATTCGTTTGGAATTGGAGGGACGATTTGCAACTGTAAACTTGGTGGCGTCTCTCAA
GTGTTCATTGTTTGGGAGGGGAAATAGCTCATTTCATCAGCTCCATTCGATTCGAGTCAT
GTTATAAGGAAAATGTCAACTTGATTCACAGTGGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g54810.1	766	protein\|beta-D-xylosidase, putative, expressed
Brachypodium v1_2	Bradi5g23470.1	773
Arabidopsis v10	AT5G64570.1	784	\| Symbols: XYL4, ATBXL4 \| beta-D-xylosidase 4 \| chr5:25810227-25813309 REVERSE LENGTH=784