barSeed - Barley Seed Development Database

Probe CUST_21608_PI390587928

Source Contig U35_1802

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21608_PI390587928	Hv_44K_v2	TAAAAACGGCTGGGTAGTCTATTCTACTCAGGGTAGCAATGAATTGTGTTGCTTCTAAAA	1325	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60041.3	1525	7e-23	1388 - 1444	100	57 / 57	plus	ABC13096
JLOC1	JLOC1_39124.1	1543	4e-23	1406 - 1462	100	57 / 57	plus
Harvest35	U35_1802	1398	3e-25	1326 - 1385	100	60 / 60	plus

Contig Sequence (1398 bp)

>U35_1802 1398 Hv_44K_v2
CACTTGCTTTTTGTGACCCCCGGGAGCGTGCAACCGATCCCCCTCGCCGGCGAAGGCCAC
ACGAACGAACGCGCCATGGTGTCCGCGCGGAAGGGCCAAGGCCGGGGAGGCGGGGTCCGA
AGCCGCCCCCGCGTCGACGGCGGCGGCAGCCTGGCTTCGCGCGTGGCCGTGCTCGCCTTC
TGCGTCGGCGGGATCTGGTCATCCTACATCACCCAGGGGATCCTCCAGGAGACGCTATCG
ACGAAGCGATTCGGGCCAGAGGAGCGGCGGTTCGACCACCTCGCGTTCCTCAACTTCGCG
CAGAACGTGGTCTGCTTCGTCTGGTCCTTCATAATGATCAAGCTGTGGTCGGGTGGTAGC
AGTCCTGCCGGGCGGGCGCCTCTTCTGAAGTACTGGGGCGTCAGCATCACCAACACCATC
GGCCCGACCATGGGGATCGAGGCGCTCAAGTACATCAGCTACCCGGCTCAGGTCTTGGCA
AAATCTTCTAAGATGATTCCAGTTATGTTGATGGGAACTCTACTCTATGGTGTTAAGTAT
ACACTTCCAGAGTACTTCTGCACCTTCCTTGTTGCCGGGGGCGTGTCATCCTTTGCATTG
TTGAAAACAAGCTCGAAGACTATCAAGAAGCTTGCTAACCCTAATGCTCCTCTTGGCTAC
GGATTGTGCTTCCTCAACTTAGCTTTTGATGGCTACACTAACTCGACCCAAGATTTAATC
AAGTCCCGGTACCCCAAGACTAACCCTTGGGATATAATGCTTGGCATGAACCTCTGGGGA
ACCATATACAATACTGTAATTATGTTTGTGGCGCCTTTACTGTTTAGTAACTGGCCATAC
GCAAACGGTTTTGAGGCGGTGAGTTTTTGCCGGGAGAACCCAGAGGTGGCCTGGGACATT
CTCATGTTCTGCCTATGCGGTGCCGTGGGTCAGAATTTTATCTTCCTAACCATCAGCCGA
TTCGGTTCTCTTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATCGTCATC
TCATCAGTTATCAGTGGTAACCCACTGTCCATGGAGCAATGGGGAAGTGTTGTGATGGTC
TTTTCTGGCCTCTCTCTCCAAATATATCTCAAATGGAAGAGAAAGAAGGGCAGAGATCAC
AAGGAATGAACTTGGTTCTTATAAGTACATTTTGATTTGTAGCTTTGATTGCACACATTT
GTTGTGGAGATATCCGGGAGATCATTAATGTAGTCCGTTGAAATTATAGAAAAGAGGTTT
ACATTTACAGAAAAAAAAAAAAAAATGTGTGAGATGCATGGTAATTGCTGATAGGGTTGG
CTATTTAAAAACGGCTGGGTAGTCTATTCTACTCAGGGTAGCAATGAATTGTGTTGCTTC
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_1802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g39260.1	359	0.0	protein\|solute carrier family 35 member B1, putative, expressed
Brachypodium v1_2	Bradi1g37070.1	358	0.0
Arabidopsis v10	AT1G14360.1	331	9e-171	\| Symbols: ATUTR3, UTR3 \| UDP-galactose transporter 3 \| chr1:4911362-4913029 REVERSE LENGTH=331