barSeed - Barley Seed Development Database

Probe CUST_21603_PI390587928

Source Contig U35_1807

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21603_PI390587928	Hv_44K_v2	GTTCATCAGACGAGAAAAGAAGGAAGAAAATAAACACTGCTGCGTGTGATCTTATGAAAA	1420	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56925.4	1492	3e-22	1321 - 1376	100	56 / 56	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.2	4276	3e-22	4032 - 4087	100	56 / 56	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.1	1610	3e-22	1544 - 1599	100	56 / 56	plus	ABC05016 ABC05017 ABC09756 ABC47546
JLOC1	JLOC1_36843.4	1883	1e-22	1543 - 1598	100	56 / 56	plus
JLOC1	JLOC1_36843.3	1879	1e-22	1539 - 1594	100	56 / 56	plus
JLOC1	JLOC1_36843.2	2264	1e-22	1924 - 1979	100	56 / 56	plus
JLOC1	JLOC1_36843.1	2268	1e-22	1928 - 1983	100	56 / 56	plus
Harvest21	ABC05016	1559	5e-23	1421 - 1476	100	56 / 56	plus	ABC05016
Harvest35	U35_1807	1559	3e-25	1421 - 1480	100	60 / 60	plus

Contig Sequence (1559 bp)

>U35_1807 1559 Hv_44K_v2
GCTTCCTTCCTCCCTCCCCCTCCTTGCCTGCTTCCGTCGCTACCTGCTCCCGCTCCGTCC
TCCTCCCCTCCGCCGTCGCCGTCGCCGGGACACGCCCAAGCCAGGACTTGTTTTCTGAAG
AATATGTCTTGCTTTGGATGCTGTGGTGATGAAGATACTCAAAGAGCACCAGACAACAGG
AATCAATACCCAGGAAGCCATCCAGCAAGGAATGATGCATATCGCACTGCCGATCCAACT
CCTAAAGGTCCTCAACCTGTGAAAGTGCAACCCATTGCAGTTCCTGCCATTCCTATGGAT
GAAATTAGGGAGGCTACTCAGGGTTTTGGTGATGAAGCTTTGATTGGTGAGGGTTCCTTT
GGTAGAGTATATTTTGGTACTCTAAGAAATGGCAGAGGTGCAGCAATCAAAAAGCTGGAT
TCCAGTAAGCAGCCAGACCAAGAATTGCTGGCACAGGTATCTATGGTGTCAAGGCTTAAG
CATGAAAATGTTGTTGAGTTACTTGGTTACTGTCTTGATGGCAACACCCGTGTCCTAGCT
TATGAGTTTGCCACTATGGGCTCTCTTCATGATATGCTTCATGGAAGGAAAGGTGTTAAA
GGGGCTCAGCCAGGTCCGGTCTTATCATGGATACAACGGGTGAAGATAGCTGTTGGTGCA
GCGAAAGGCCTAGAGTATCTTCATGAGAAAGCACAGCCTCACGTCATACACAGGGACATC
AAGTCCAGCAATGTTCTTCTCTTTGATGAAGATGTAGCTAAAATAGCTGACTTCGATTTG
TCAAACCAAGCTCCTGACATGGCAGCCCGGCTTCACTCAACTAGGGTTCTGGGAACATTT
GGATACCATGCACCTGAGTATGCAATGACTGGTCAACTTAGCTCTAAGAGTGATGTGTAC
AGTTTTGGAGTTGTTCTTCTGGAGCTATTGACTGGGAGGAAACCTGTCGACCATACATTA
CCGAGGGGGCAGCAGAGCCTTGTCACATGGGCCACCCCAAGACTGAGTGAAGATAAGGTT
AGGCAATGTGTTGACTCAAGACTTGGAGGGGACTATCCTCCTAAGGCTGTTGCAAAGTTT
GCAGCTGTTGCGGCATTGTGCGTCCAATACGAAGCTGACTTCCGGCCAAACATGAGCATC
GTCGTCAAGGCGCTCCAGCCCTTGCTGAACGCGCGAGCAGCCCATCCCGGGGCTGAACAT
GCTGGGCGCTAAGCTCCAGTCGGACCTTTTGTATGATATAATAGTTAAGGAAAAATGAGC
CATCAATTGTTGTTCTCGCGGGGCGGGGCGCGTGGCAGGCGGTTTTTGTACATTTGTGAT
TATTCTTCCCAAGTTGTAACCCTCTGAGATTCTAGTACCAGAAATATTCGATTCTTTGTA
TCGGTTGCAAGATCAGCAAGTATCTAGTACCTAGAACACCGTTCATCAGACGAGAAAAGA
AGGAAGAAAATAAACACTGCTGCGTGTGATCTTATGAAAAAAAAAAAAAAGTTCAGATTC
TAGATTGGCTGCAAATCATTCAATCAACAAATTTCACATTTTGTGTCGAAAAAAAAAAA

Homology of Contig U35_1807 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g04520.1	362	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g36980.1	362
Arabidopsis v10	AT3G62220.1	361	Protein kinase superfamily protein \| chr3:23029276-23030864 REVERSE LENGTH=361