barSeed - Barley Seed Development Database

Probe CUST_21602_PI390587928

Source Contig U35_1808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21602_PI390587928	Hv_44K_v2	TGAGTTTGCCACTATGGGCTCTCTTCATGATATGCTTCATGGAAGGAAAGGTGTTAAAGG	580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56925.3	1783	2e-24	582 - 641	100	60 / 60	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.1	1610	2e-24	666 - 725	100	60 / 60	plus	ABC05016 ABC05017 ABC09756 ABC47546
JLOC1	JLOC1_36843.4	1883	8e-25	665 - 724	100	60 / 60	plus
JLOC1	JLOC1_36843.3	1879	8e-25	661 - 720	100	60 / 60	plus
JLOC1	JLOC1_36843.2	2264	8e-25	661 - 720	100	60 / 60	plus
JLOC1	JLOC1_36843.1	2268	8e-25	665 - 724	100	60 / 60	plus
Harvest21	ABC05016	1559	3e-25	543 - 602	100	60 / 60	plus	ABC05016
Harvest21	ABC05015	689	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_1808	701	3e-25	581 - 640	100	60 / 60	plus
Harvest35	U35_1807	1559	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_1808 701 Hv_44K_v2
GAACAGCTCACACACGCTGTTGCTACTTCCTTCCTCCCTCCCCCTCCTTGCCTGCTTCCG
CCGCTACCTGCTCCTCCGCCTCCGCTCCGCCCTCCTCCCCTCCGCCGTCGCCGTCGCCGT
CGCCGGGACACGCTCAAGCCAGGACTTGTTTTCCGAAGAATATGTCTTGCTTTGGATGCT
GTGGTGATGAAGATACTCAAAGAGCACCAGACAACAGGAATCAATACCCAGGAAGCCATC
CAGCAAGGAATGATGCATATCGCACTGCCGATCCAACTCCTAAAGGTCCTCAACCTGTGA
AAGTGCAACCCATTGCAGTTCCTGCCATTCCTATGGATGAAATTAGGGAGGCTACTCAGG
GTTTTGGTGATGAAGCTTTGATTGGTGAGGGTTCCTTTGGTAGAGTATATTTTGGTACTC
TAAGAAATGGCAGAGGTGCAGCAATCAAAAAGCTGGATTCCAGTAAGCAGCCAGACCAAG
AATTGCTGGCACAGGTATCTATGGTGTCAAGGCTTAAGCATGAAAATGTTGTTGAGTTAC
TTGGTTACTGTCTTGATGGCAACACCCGTGTCCTAGCTTATGAGTTTGCCACTATGGGCT
CTCTTCATGATATGCTTCATGGAAGGAAAGGTGTTAAAGGGGCTCAGCCANGTCCGGTCT
TATCATGGATACAACGGGTGAAGATAGCTGTTGGTGCAGCG

Homology of Contig U35_1808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g04520.1	362	4e-113	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g36980.3	264	3e-119
Arabidopsis v10	AT2G47060.4	397	1e-75	Protein kinase superfamily protein \| chr2:19333116-19334759 REVERSE LENGTH=397