barSeed - Barley Seed Development Database

Probe CUST_21599_PI390587928

Source Contig U35_1811

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21599_PI390587928	Hv_44K_v2	TGTGCACATCCGGTTAATTCTAGACGGAAGAAAGTAAGAAAGAATAATTGGTACACCGAA	866	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.873	4.594	1.164	0.732	0.462	0.432
Raw	124.525	135.282	29.208	30.725	5.218	5.929

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74308.1	1106	2e-24	1047 - 1106	100	60 / 60	plus	ABC07450
JLOC1	JLOC1_49515.1	1460	8e-25	1008 - 1067	100	60 / 60	plus
Harvest21	ABC07450	941	3e-25	867 - 926	100	60 / 60	plus	ABC07450
Harvest35	U35_1811	941	3e-25	867 - 926	100	60 / 60	plus

Contig Sequence (941 bp)

>U35_1811 941 Hv_44K_v2
GTCCCCCGGCTGCAGGAATTCGCCGAGGCTGAAGTGGTCACCTCCTCCTCGGCTCCACCA
TGCTTCCCAGGATCCAGAGGAGCATCTTCCATCTCGGGGAGGAGGGTGGTGATGTCCAAG
TCCACCGCGGCGCTGATGATCGCCATGGAGATAACATTGTTGACATCCAGCGGCGCCTCG
GGGGGCACACCCACGGCCGCCGGCTGCGGCGAGGAGGACGAGACGCCGCCGACGTCGTTG
TCGGGCTGCAGATCCTCGTCCAGCACCACCCGCAACCGTGCCACGTCGTCCTGAAGCAGA
TGGTCAGCTCGCCGCCGGCGCGCCACCGCCGTCCGTGCAGCTTCTCGGGAGCCTGCTTCC
TTTGCCGGAGGGAGCTCAGTCCCGACAAAGACGTGTACATGTACAGGGGCGACCAGGGGT
TCTGCAGCGAGGAGTGCCGGCAGCGGCAGATCTTGGCGGACGAGGCCAGAGAGCACGAGG
CCATGGTCAACAAGGAGCGTCGGGGTCTGGCGCACCGTCGTCACCACCACGGGCCACGCG
CGGCACCGCCGGTGGCGATCCGGGGCGAGCCGACGAGATTACTGGCTGTATCCTAGCTTG
ATTATGATGCATGCACGAACATGACATCCATGAACAGAACGAGCAAGAACCTATGACGCT
GGGAAGCTGGTTGCAAGTAATCGAGGTGCAAATTAAGAAGAACAATATGGATAATTGCGT
ATACGGCGAGGTGAGGGTGAGAGTGAGATGGTATATTATGATAGAGAGACGTTGAAGTAG
GGTGCATGTTTTTTCTTCAGGCTGGTAAGTTCGGATCTGTAGCCACGATGCAACTAATGT
AATCTGCTCCTGGCCGCCTGTTAATATGTGCACATCCGGTTAATTCTAGACGGAAGAAAG
TAAGAAAGAATAATTGGTACACCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g30990.1	182	7e-53
Arabidopsis v10	None