barSeed - Barley Seed Development Database

Probe CUST_21596_PI390587928

Source Contig U35_1814

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21596_PI390587928	Hv_44K_v2	TAAAAACTTGATGTATCGCCCGATAGCAGTCGCCACACGACGAGATAAAATGAAGAGCAG	1653	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.415	1.834	1.114	0.741	0.270	0.330
Raw	4705.003	9641.857	5044.337	5458.530	677.871	895.089

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11427	841	3e-25	777 - 836	100	60 / 60	plus	ABC11427
Harvest35	U35_1814	1718	3e-25	1654 - 1713	100	60 / 60	plus

Contig Sequence (1718 bp)

>U35_1814 1718 Hv_44K_v2
CCGGGGCTGCAGGGCCGCTCCTTCGTCCAGTCCCCACCCCCGAGGCGAGCCAGCCTCACC
CTCGGCTCCCTCCCTCCCTCCCAGTCCCACACCCCATTGCCGCCTCTATCCAATAAAAAC
TCCTGTACAGATCAAACTCCAGGGATCCGGATCAGCATATCCCGCGCCCCGCCGCGCGAC
TCCCCTCCCCGCCTCGATCCTCCCTGACATTTTTTTTCCCGATCGGGGCTAGGGTTAGGG
CCTCGGGGAGGAGGGCGCCGCATTTCAGGCCGCCGCCGGAGTCGACGAGCCAGGCCGCCC
GCGGAGGCTAGCGGGAGGGGGGCGAGGAGAAATGGAGAAGAAGAAGGTGGCGGTGTCCAA
GGTGTGCCACGGCCACTCGCGGCCGGTGGTCGACCTGTTCTACAGCCCCGTCACGCCCGA
CGGCTACTTCCTCATCAGCGCCAGCAAGGACTCGAATCCGATGCTTCGAAATGGTGATAC
TGGAGATTGGATTGGGACTTTTGAAGGTCATAAAGGTGCAGTTTGGAGCTCTTGTCTCGA
CACAAATGCTCTCCGTGCCGCCTCCGGTTCTGCGGACTTCTCAGCCAAAATATGGGATGC
ACTAACAGGAAATGAGCTACATTCATTTGAGCACAAGCATATAGTCCGTGCATGTGCCTT
TTCTGAGGATACGCACATGTTGCTCACTGGAGGTGTGGAGAAGATTTTGCGTATATACGA
TATGAATCGTCCAGATGCAGCTCCAAGGGAACTTGACAAAACACCTGGTTCTGTACGAAC
TGTTGCTTGGCTTCACAGTGACCAATCTATTCTAAGTTCCTGCTCTGATATGGGTGGAGT
GAGGTTATGGGATGTGAGAAGTGGAAAAATTGTGCAAACTCTTGAAACCAAGGCACCTGT
CACCAGTGCAGAAGTAAGCCAGGACGGCAGGTTCATCACTACAGCTGATGGCTCAAGTGT
TAAATTTTGGGATGCGAATCATTTTGGGCTTGTTAAAAGCTATGATATGTCATGCACTGT
GGAGTCAGCTTCACTTGAACCAAAGTCTGGGAGTAAGTTCATCACTGGAGGGGAAGATAT
GTGGGTTCATGTATATGATTTCTTCACTGGTGAAGAAATAGCCTGCAACAAAGGTCATCA
CGGCCCCGTCCACTGCGTCCGGTTTGCGCCTGTTGGCGAATCATACGCATCAGGATCAGA
AGACGGCACCATCCGGATCTGGCCGCTGAACCCCGCAAGCACCGATGATGCTGAGGCGCC
CACCGCCAACGGCAAACCAAAGGCCGCCGCGGTGGCAAACGAGGTCGCCCGTAAAATCGA
AGGCTTCCACATCAGCAAGGAGGGGCAGACCGAGGCGTAGGAGGGAGGATCGCATCGTCA
CTGAACCTGGCAGTGTTTAAGCCTTGTTGGGGGTACTGCCGTTGCCGTCCGTCAGAGCCG
GTCCTGGTCTCATGGTGTCGCCCTCTGGTCCATCACGTCGAAGCTTCTTTGCCGACCAAG
GGCGGCGGACGATTCCGTCTGGCTCACGCCCGGACGGTGGATTTCTGTAAGGGGTACTCT
TCGGTAGACTGTTAAGATTAATGATAGCATCTAAGGAATCGGAATAAACCGAAGGGGGAG
AGCGAGTCCAGCAGTTAGTTTGTTTGCAGAGAGTAAAAACTTGATGTATCGCCCGATAGC
AGTCGCCACACGACGAGATAAAATGAAGAGCAGCCGCG

Homology of Contig U35_1814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g39760.1	346	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g36840.1	341
Arabidopsis v10	AT1G52730.2	343	Transducin/WD40 repeat-like superfamily protein \| chr1:19642866-19644978 FORWARD LENGTH=343