barSeed - Barley Seed Development Database

Probe CUST_21593_PI390587928

Source Contig U35_1817

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21593_PI390587928	Hv_44K_v2	GCGGTGATCAAAACCGTACTTGTATTTGCAGCCCCAAATAATTACGTGAATTTGAAACCA	894	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.580	2.552	1.139	0.669	0.205	0.229
Raw	366.365	575.842	219.249	215.476	21.378	27.076

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20963.1	942	2e-24	5 - 64	100	60 / 60	minus	ABC04876
JLOC1	JLOC1_14537.1	1198	8e-25	1019 - 1078	100	60 / 60	plus
Harvest21	ABC04876	970	3e-25	895 - 954	100	60 / 60	plus	ABC04876
Harvest35	U35_1817	970	3e-25	895 - 954	100	60 / 60	plus

Contig Sequence (970 bp)

>U35_1817 970 Hv_44K_v2
GTGGCCTCCTCGATCGCAGGCTGAGACTCGCGCAACCTTCTCCCGTCCCATATTAAACTC
GCCCCATCCCATCTAGGGTTTGGCCCTCCCAAGACAACAAGACCCCCCAACCCCCCTGTA
TCCCTCTCCCAACCCTTATCTGTATCCCTCTCCATGGCCACGGCGGCGGCGGCGGCGAAG
CGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGTCACCAGCGGCCACACGCTC
GTCGCCAAGGTGCTCAGCTCCAAGACCGTCCTCCAGAAGGCCCGCGCCACTGGCGGCCCC
GGCCCAGCGGCCAAGCCCACCAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGC
GTCCTCTTCACCGCCCGCAACGACCAGGTTGATGTGTTGAAGCCTGGCAACACTGTCATT
ATCCGCAATGCAAAGATTGATATGTTCAAAGGGTCAATGAGGCTTGCTGTTGACAAATGG
GGCCGTGTTGAAGTAACTGAACCAGCAAGCTTTGGTGTAAAGGAGGACAATAATCTTTCA
CTTGTGGAGTATGAACTTGTCAATGTTGAAGAGTGAAAATCACATCGACCTTGCTGTCAA
TCAGAAGAAGTGCTTTCCAAAGCCTGTTGGTCAAATCTACCTGTTGAGTTGTCTAGAATG
TGAAAGATGGATCTTCTGAGTTCATATTGGAATTGTTCGCTCGAACTACTGCAAGTTCCT
TCTTATCAAGCATTTCTATCTATGAGTGATTGTTAGTTGCTGCAGCAGTTGTGTTTCTGA
GAACAATTGTGATGCTGAGCAGTAATATACAATTTGATCTCCTAAATGGATTATGCACCA
TCCAGTTTGCATTAAATTTTATTTTAAACACTGTCATGAACATATTGATGTTGTGCGGTG
ATCAAAACCGTACTTGTATTTGCAGCCCCAAATAATTACGTGAATTTGAAACCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_1817 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55030.1	141	1e-64	protein\|DNA-binding protein-related, putative, expressed
Brachypodium v1_2	Bradi2g08260.1	145	3e-51
Arabidopsis v10	None