barSeed - Barley Seed Development Database

Probe CUST_21592_PI390587928

Source Contig U35_1818

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21592_PI390587928	Hv_44K_v2	GCTCATGTAGTCATATGTGTATTGGCATGGTATGGATAAAATGTGTAATCATCATTGCAA	1308	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365056	3431	2e-24	1255 - 1314	100	60 / 60	plus	ABC05146
MLOC	AK250031.1	3863	2e-24	1258 - 1317	100	60 / 60	plus	ABC05146 ABC14348
MLOC	MLOC_4026.4	3430	2e-24	1973 - 2032	100	60 / 60	minus	ABC05146 ABC14348
MLOC	MLOC_4026.6	3583	2e-24	1821 - 1880	100	60 / 60	minus	ABC05146 ABC14348
MLOC	MLOC_4026.1	3406	2e-24	1970 - 2029	100	60 / 60	minus	ABC05146 ABC14348
MLOC	MLOC_4026.2	3548	2e-24	2058 - 2117	100	60 / 60	minus	ABC05146 ABC14348
MLOC	MLOC_4026.3	3456	2e-24	1966 - 2025	100	60 / 60	minus	ABC05146 ABC14348
JLOC1	JLOC1_2445.5	3333	8e-25	1378 - 1437	100	60 / 60	plus
JLOC1	JLOC1_2445.4	3346	8e-25	1378 - 1437	100	60 / 60	plus
JLOC1	JLOC1_2445.3	3972	8e-25	1378 - 1437	100	60 / 60	plus
JLOC1	JLOC1_2445.2	3582	8e-25	1614 - 1673	100	60 / 60	plus
Harvest21	ABC05146	1445	3e-25	1309 - 1368	100	60 / 60	plus	ABC05146
Harvest21	ABC50888	318	1e-23	27 - 86	98	59 / 60	minus
Harvest35	U35_1818	1445	3e-25	1309 - 1368	100	60 / 60	plus

Contig Sequence (1445 bp)

>U35_1818 1445 Hv_44K_v2
GCAGCTTTCATTTCATCAGCATAAAGGGTGGGGGGTGCCAAGGCCCACCCCCACCAACGG
GCGGAGGAAGAGAGGAAGGGGGGCAAGGACAAGGAGCAGACCAAGGAAGAAGATGAGCAA
CACTGCACTCCTCACCCCCTACAAGATGGGAAGGTTTGATCTTTCCCACAGGGTGGTTCT
CGCACCACTGACAAGGGAGCGATCCTTCGGAAATGTTCCTCAGCCTCATGCCGTACTGTA
TTATCAACAGAGAACAACCGAAGGAGGCCTTTTGATTGCTGAGGCCACTGGAGTTTCCGA
CACTGCTCAAGGGTACAAAGATACTCCTGGCATTTGGACAAAGGAGCAAGTAGAAGCATG
GAAACCGATCGTCAATGGGGTTCATGCAAAAGGAGGAATATTTTTCTGTCAGATTTGGCA
TGTAGGAAGAGTCTCTAATCACACTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCAC
TGATAAGCCACTCAAACCTGTAGTTAGAGCCAACGGCATAGATGTGGCTACAATCTCAAC
TCCTAGGCGGCTACAGACTAATGAGATTCCTTTGGTAATCAATGATTTTAGGGTTGCTGC
TAGAAATGCGATTGAAGCCGGATTTGACGGTGTTGAAATCCATGGAGCTCATGGTTATTT
GATTGATCAGTTCTTAAAGGACCAAGTAAATGATCGCACTGACAAATATGGTGGGAGCTT
AGAGAATCGTTGCCGTTTTGCACTAGAAGTAGTTCAAGCCGTAGTTGATGAAGTTGGAGC
TGATAAGGTTGGGATAAGGCTCTCACCGTTTGCGAGCTATTCAGAGGCATCCGACTCAAA
CCCAGAAGCTCTAGGCCTATACATGGCACATGCACTGAACAAATTTGGAATTCTCTATTG
CCACATGGTGGAACCACGGATGGTGAATATTGGTGAAAAGTTTGAAACTCCCCATAGTCT
TCGCCCCATAAGGGATGCTTTTAAGGGAACATTTATTGTAGCTGGGGGATACGACAGGGA
TGATGGAAATAAAGCAATCGCCGATGGCTATGCTGACTTGGTAGCATATGGGCGCTTGTT
TTTATCCAATCCTGACTTGCCTCGGAGGTTTGAAATAGGTGCTCCTCTCAACAAGTACAT
AAGAGATACTTTCTACCTCTCCGATCCAGTTATTGGATACACTGACTACCCATTTCTGCC
GTCCGATGTCTAGATGAGCCTTTCAGGAATGAATCCCTCCCATCCCCATCAGATCGTCCA
CCTTATGTATCAGTACTATGTTAAAGGAATAAGGTCATTGATTTCAATGCTCATGTAGTC
ATATGTGTATTGGCATGGTATGGATAAAATGTGTAATCATCATTGCAATTTAAGAAGTGT
ATGTGTGAAGTACAAAAAAAAAAAAAAGCAAATTAAGAAGTTTGATTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_1818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g11240.1	381	protein\|12-oxophytodienoate reductase, putative, expressed
Brachypodium v1_2	Bradi5g11261.1	370
Arabidopsis v10	AT1G76690.1	374	\| Symbols: OPR2, ATOPR2 \| 12-oxophytodienoate reductase 2 \| chr1:28778976-28780355 FORWARD LENGTH=374