barSeed - Barley Seed Development Database

Probe CUST_21591_PI390587928

Source Contig U35_15708

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21591_PI390587928	Hv_44K_v2	AATGGATATACTCGATCGACGTGAGCAATAAACTCGTGCATGAATAAAATGCTCTTGCGT	866	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.927	6.527	0.917	0.672	1.238	1.102
Raw	3.947	37.619	6.597	6.547	3.691	3.499

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39318.1	1303	2e-24	963 - 1022	100	60 / 60	plus	ABC03667 ABC29452 ABC38957
JLOC1	JLOC1_25629.1	1225	8e-25	988 - 1047	100	60 / 60	plus
Harvest21	ABC29452	265	3e-25	176 - 235	100	60 / 60	plus	ABC29452
Harvest21	ABC03667	2696	3e-25	2618 - 2677	100	60 / 60	plus	ABC03667
Harvest21	ABC03666	945	3e-25	867 - 926	100	60 / 60	plus
Harvest21	ABC38957	306	6e-22	21 - 77	98	56 / 57	minus	ABC38957
Harvest35	U35_15709	2697	3e-25	2618 - 2677	100	60 / 60	plus
Harvest35	U35_15708	955	3e-25	867 - 926	100	60 / 60	plus
Harvest35	U35_42937	306	6e-22	21 - 77	98	56 / 57	minus

Contig Sequence (955 bp)

>U35_15708 955 Hv_44K_v2
GAACACTTAAGCTCTACTACGTACAGGGGAGAGGAGAGAACACGATGGCATCCCTCCCCA
CTTCTTCCGTCCTGCTCCCAATCCTCCTCCTCGTCTTGGTCGCCGCTACAGCGGACGCGG
CGACCTTCACGGTGATCAACAAGTGCCAGTACACGGTGTGGGCGGCGGCGGTGCCGGCCG
GCGGGGGCCAGAAGCTGGACGCGGGGCAGACGTGGAGCATCAACGTGCCGGCCGGCACGA
CGAGCGGGCGCGTGTGGGCGCGCACGGGGTGCAGCTTCGACGGCGCCGGCAACGGGCGGT
GCCAGACGGGTGACTGCGGCGGGAAGCTGCGGTGCACGCAGTACGGGCAGGCGCCCAACA
CGCTGGCGGAGTTCGGGCTCAACAAGTACATGGGGCAGGACTTCTTCGACATCTCCCTGA
TCGACGGGTACAACGTGCCCATGTCGTTCGTCCCGGCCCCCGGCTCCCCCGGGTGCCCCA
AGGGCGGGCCGCGGTGCCCGAAGGTGATCACGCCGGCGTGCCCCAACGAGCTGCGGGCGG
CGGGAGGGTGCAACAACGCGTGCACGGTGTTCAAGGAGGACAGGTACTGCTGCACGGGGT
CGGCGGCCAACAGCTGCGGGCCGACCGACTACTCGAGGTTCTTCAAGGGGCAGTGCTCGG
ACGCGTACAGTTACCCCAAGGACGACGCCACCAGCATCTTCACTTGCCCCGGCGGCACAA
ACTACCAGGTCATCTTCTGCCCATGAGCGGCCATGCATGGAAGAGGTCTCGAGCACACGG
ACAAGAATAAGTCTATGCCTATCCGATGTTATATATCAAAATAAGTGCGTTTGGATGCAT
ACATTCGTATGCACATGTAAGCCGGAAATGGATATACTCGATCGACGTGAGCAATAAACT
CGTGCATGAATAAAATGCTCTTGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45960.1	233	4e-115	protein\|thaumatin, putative, expressed
Brachypodium v1_2	Bradi1g13070.1	235	1e-122
Arabidopsis v10	AT4G11650.1	244	2e-82	\| Symbols: ATOSM34, OSM34 \| osmotin 34 \| chr4:7025127-7026113 REVERSE LENGTH=244