barSeed - Barley Seed Development Database

Probe CUST_21585_PI390587928

Source Contig U35_15714

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21585_PI390587928	Hv_44K_v2	GCAAGAACATGTGGTTACACAACATGTTGCTTCATACCCTTTTGTGATTATTTGTTTCTT	616	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.836	1.797	1.085	0.655	0.196	0.144
Raw	447.297	671.012	363.587	355.255	36.861	28.497

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363786	2066	2e-24	1975 - 2034	100	60 / 60	plus	ABC12043 ABC13143
MLOC	MLOC_80856.1	559	2e-24	23 - 82	100	60 / 60	plus	ABC13143
JLOC1	JLOC1_53823.1	2402	8e-25	2167 - 2226	100	60 / 60	plus
Harvest21	ABC13143	626	3e-25	503 - 562	100	60 / 60	plus	ABC13143
Harvest21	ABC13142	431	3e-25	317 - 376	100	60 / 60	plus
Harvest35	U35_15714	740	3e-25	617 - 676	100	60 / 60	plus

Contig Sequence (740 bp)

>U35_15714 740 Hv_44K_v2
CCGCCATGGGCTTCGACGTGCGCATCGCGGAGCCCGACCAGCACACCGACATGTCCACCT
TCGCGCGGCTGGTGAACTCCGCGGACGTGATGGTGGGCGTGCACGGCGCGGGGCTGACCA
ACATGGTGTTCCTCCCCGCGGGGGCCGTGCTGATCCAGGTGGTGCCGTTCGGAGGGCTGG
AGTGGCTCACCGGCGTGACCTTCAAGAACCCGGCGGCGGACATGGAGGTGACGTACATGG
ACTACAACGTGCAGCTGGAGGAGAGCTCGCTGCTGGAGCAGTACCCGCGGAACCACCAGG
TGCTCACCGACCCCTACGCCGTGCACAAGCAGGGGTGGGACGCGCTCAAGGCGGCGTACC
TGGACAAGCAGAACGTCCGGCTGGATCTGGACAAGTTCAGGGCCACGCTCCGGGACGCGC
TCAGCCGGCTGCCGCCGGCGGCCTGAGCCTGCCCTGCTCGACCACGCCCGTCCCTGATTC
GGTAGATATAGGTCCGTGTATATCTATCTGCTCTGCTCCGTGCCTGCCTCGTTTTGCTTG
ACTTGATTCTTGATTTCTTCTTCTTCTTCCTCCTCTTCCTCTTGCTCTTCTTGTGGTAAG
ATCCCATTGACGGCGAGCAAGAACATGTGGTTACACAACATGTTGCTTCATACCCTTTTG
TGATTATTTGTTTCTTATATCTATTAATTAATTTACAAGAAAAATGCCAAGAACATATGG
CAGTCGGCCTTCTTCTCAAA

Homology of Contig U35_15714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04250.3	372	2e-81	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g03120.1	502	2e-81
Arabidopsis v10	None