barSeed - Barley Seed Development Database

Probe CUST_21583_PI390587928

Source Contig U35_15716

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21583_PI390587928	Hv_44K_v2	TTTAGAGCATGAGGTATAAACTTGCAACCGTGTTAACACGATGCACACCACGCACACACT	970	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6357.2	2538	2e-24	34 - 93	100	60 / 60	minus	ABC04687 ABC04689 ABC12043
MLOC	MLOC_6357.1	2153	2e-24	47 - 106	100	60 / 60	minus	ABC04687 ABC04689 ABC12043
JLOC1	JLOC1_4134.1	2203	8e-25	1973 - 2032	100	60 / 60	plus
Harvest21	ABC04687	1053	3e-25	971 - 1030	100	60 / 60	plus	ABC04687
Harvest35	U35_15716	1087	3e-25	971 - 1030	100	60 / 60	plus

Contig Sequence (1087 bp)

>U35_15716 1087 Hv_44K_v2
CTACAAGTCGTGGTGGATGAGCAGGTACATCCAGATCTTCCAGCAGATGAGCCGGTACGA
GGTGGTCGACATCGACGCCGACGACGAGGTCCGGTGCTACCCGAGCGCCGTGGTCGGGCC
GACCTTCCACAAGGAGCTGGGCGTGGATCCCTCCAAGGCGCCGTCGGGCGCCTCGATGGC
GGACTTCCGCAAGATGCTCCGCAACGCGTTCGGGCTGGAGCGCGCCACTGCGACGCCGAG
CGGCGACCGGTGGGACATCCGCCGCCGGCCCCGACTGCTGATCATCTCCCGGCGCACCTC
ACGCGGGCGGGCGTTCATGAACGAGCGCGCCATGGCCGACATGGCGGGGAGCCTGGGGTT
CGACGTCCGCATCGGGGACCCGGACACGACCTCCGACACGTCCAAGTTCGCGCGGCTGGT
GAACTCGTGCGACGTGATGGTGGGCGTGCACGGCGCCGGGCTGACCAACATGGTGTTCCT
CCCGGCGGGCGCCGTGCTGGTGCAGGTGGTGCCGTACGGGCGGCTGGAGTGGCTGGCCCG
AAACACGTTCGCGGAGCCGTCGGCGGGCATGGAGGTGCACTACCTGGAGTACGTGGTGCA
GCTGGACGAGACGACGCTGAGCGAGCAGTACCCCAGCGACCACCTGGTGCTCAAGGACCC
CATGGCCATCCACAAGCAGGGCTGGGACGCGCTCAAGACCACCTACCTCGACAAGCAGAA
CGTCCGGCCGCACCTCGGCCGCCTCAAGAAGACCTTCCTCCAGGCACTCAAGATGCTGCC
GCACGGCCGGGACGATTAGACCAGCTTTAGTTCACCGTCGTCCCCATCATCGCGGGAGCT
TTGAGAGCTGCTGGTAGCCTAGTATCATCAGTAATAGTGTACAAAATGGATGCAGAGGAC
AAGTGTCTATAACCTTTTCTCTGTTTTCGCCTAATCCGTGGGTTGCGGTGCACTCTACTC
TAACTCTGTTTTTAGAGCATGAGGTATAAACTTGCAACCGTGTTAACACGATGCACACCA
CGCACACACTGTATCCTCTCTCTTGCTAGAAGCAATGCCCATGGTTTCCTTAAAAAAAAA
AAAAAAA

Homology of Contig U35_15716 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35020.1	441	1e-144	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi4g43180.1	485	2e-152
Arabidopsis v10	AT3G18170.1	384	3e-58	Glycosyltransferase family 61 protein \| chr3:6228393-6229547 FORWARD LENGTH=384