barSeed - Barley Seed Development Database

Probe CUST_21582_PI390587928

Source Contig U35_15717

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21582_PI390587928	Hv_44K_v2	AAGAAGAGAGTTGTAAACAACCAGAGCTCATAAGCATTACTCTCATGGTGTAAAGTGTTT	838	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64310.1	977	2e-24	20 - 79	100	60 / 60	minus	ABC04687 ABC04689
Harvest35	U35_15717	901	3e-25	839 - 898	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_15717 901 Hv_44K_v2
GGACGTGATGGTGGGCGTGCACGGCGCCGGGCTGNCCAACATGCTCTTCCTGCCAGCCGG
CGCCGTGCTGATCCAGGTCGTGCCCTACGGAGGGCTGGAGTGGCTCGCCCGCGGCACCTT
CGAGGAGCCGTCCAAGGACATGCAGCTCCACTACATCGGCTACAAGATCCAGCTCGACGA
GACGAGGCTGAGCGAGCAGTACCCCAAGGACCACCCGGTGCTCACCGACCCGCTCTCCAT
CCACAAGCAAGGGTGGGAGGCGCTCAAGACGGTGTACCTCGAGAAGCAGAACGTGAGGCC
GCACCTGGGCAGGCTCAAGCTCACGTTCATGGAGGCGCTCAAGCTGCTGCCCCATGGGCG
CCAGGCCAAGGCCAACAACTGAGCGCGGCGATCGCCGGGCCTATCTGATCATGGATGTAA
TGATCCGTCGAAATCATGTGTACATTGCGCGCGGTCGGTCGATCGATCAATTCCATGATG
GTTAATCTTGGAGCATAGGTAGAAGAACATATATAGGGGTTTGCTCGTCTGTTGGTGCTG
TTCATTTGTTCAGTTTCTTTGGTTGTTTGAAGCCTGCGATCGGCGGCTATCCCTGCATCC
TGTCTGTATGAAGTCCTACAACTACAGAATGTAGTAGTAAGATGGAAGAAGCATGTGGAA
GCTAATAAGAAGGCCAAGGATTACATACTCCTTCGGTGAGAAAAAAAAAAAAAAAAAGCA
TAAGGGTGGAGGGATGGAGTCCGGTGTCTCATCCATTTCTTTCCCTTTTTCCCTTTCAAA
ACGAAGACAGAAGATTTACTCCATTCCATTAATTGAGAGGAAGTTATAACATTCGCAAAA
GAAGAGAGTTGTAAACAACCAGAGCTCATAAGCATTACTCTCATGGTGTAAAGTGTTTCC
C

Homology of Contig U35_15717 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22650.2	504	4e-64	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g11300.1	502	3e-65
Arabidopsis v10	None