barSeed - Barley Seed Development Database

Probe CUST_21570_PI390587928

Source Contig U35_15729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21570_PI390587928	Hv_44K_v2	ATGTACTACTCCTATATGTATAGCTGAAAGCCATCGTGGCCCTTTTAATGCCTATCAAGA	1432	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367513	1454	2e-24	1385 - 1444	100	60 / 60	plus	ABC05150 ABC41342
MLOC	MLOC_61509.1	1838	2e-24	239 - 298	100	60 / 60	minus	ABC05150 ABC41342
MLOC	MLOC_61509.2	761	3e-21	1 - 54	100	54 / 54	minus	ABC05150 ABC41342
JLOC1	JLOC1_40201.1	1774	8e-25	175 - 234	100	60 / 60	minus
JLOC1	JLOC1_40200.1	1029	8e-25	715 - 774	100	60 / 60	plus
Harvest21	ABC05150	1481	4e-24	1409 - 1466	100	58 / 58	plus	ABC05150
Harvest35	U35_15729	1517	3e-25	1433 - 1492	100	60 / 60	plus

Contig Sequence (1517 bp)

>U35_15729 1517 Hv_44K_v2
ACACACGCACCACCACACCGCGCACTGACGCAGCGAGATCGGTCAGTCAAGAGGGCGAGG
CGTGCACTGCTGGTCCTCCTCTGCCCGCGCATGGTGCCCCGTCCCCGCCGGCCGGCGCCG
ACGACGACGACGCTAGTCGCCGCACATGTTGCATGAGCGGCACGCACCACCCTCCGCGTC
CGACGACGAGGACGATGCCCCAGGGGCCAACAACGACGAGGAGGGCGCTCTGACTCTGGT
GACCACCACCGCCGCCAGCACCACCAACACCGACTTCCACGACGTCGACGAGGTCATCGA
GGTGCGCGAGGTCCACCCGCTGTCGCCGCCGCACCCGCCCTTCACCCCGCCCACTCGCAC
CGTCTCCGCGGCCTCCACCGCCTGGGACAGCGCCAGCAGCCACCGCTCCGTCACCTCCGA
GGAGCAGTTCATGACGATGAGCCGCGAGTTCACCGCCATGGTCGCCGCCGGCGCCGGCGC
CGGGGCGACCAACAACAACAACAACAACCACCCCAATAACAGCAACCACAACCCCGGCGG
GCCCTACGACGGCGGCCCCGACCAGCTGACCAGCATCGGCGAGGACGAGCTGGAGGAGCA
CAACCCGCTGGCCATCGTGCCGGACAGCGGCCACCCCTTCGCCACGCCGCCCAGCAGGAG
CGGCGGCAGCAGCGGCCGGGCAGCGCGGCTCGACCTTGAGGTGGTGCCCGCCGCCGGCCC
GCCCGTGGAGGCGAGCCCGGTGAAGAAGGAGGAGGTGGAAACCAAGGTGTCGGCGTGGCA
GACGGCGGAGATCGCCAAGATCAACAACCGGTTCAAGCGGGAGGAGGTGGTCATCAACGG
CTGGGAGACGGAGCAGGTCGACAAGGCATCCGCCTGGCTCAAGAAGATTGAGAGGAAGCT
GGACGAGCAGCGCGCCAAGGCGGTGGAGAAGACGCAGAACGACGTGGCCAAGGCGCGGCA
CAAGGCGGAGGAGAAGCGGGCGTCGGCGGAGGCCAAGCGGGGGCTGAAGCTGGCCAAGGT
GCTGGAGCTGGCCAACTTCATGAAGGCCGTCGGCAGGGTGCCCACCAAGCGCTCGTTCTT
CTAGCCACCAGCCTCATGCATGCCCTCCCTCCTCAGCTCTGGAATGGAATCCCTATGTGT
TTTTGCCTATGGGTAATGGGTAGTACGTAAGTAAGTAAGTAAGTAAGGCGTGTGCTGCTG
CATCCGGTCGATCGGGAACCTAATTGTAAAAAAGGATTTGAAACTTTGCCGGCGCGCGGC
GACCACGCACCGGGTGGCGCTTTTTTTTTTTGTTTGGCTTGTATATGCGCAAGAAGAAAA
ACTGGTGTGGAACGAATAGCGTGTTTGTGTTTGCTACAAACCTGCAAACATTCAGAGCAA
TTGTTCATATGTAACACCGCCGGTGTGGATCCTTAACGTTCTTCGGTTCTGTATGTACTA
CTCCTATATGTATAGCTGAAAGCCATCGTGGCCCTTTTAATGCCTATCAAGATTCAAGAG
AAAAAAAAAAAAAAAAA

Homology of Contig U35_15729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59360.1	285	2e-82	protein\|remorin, putative, expressed
Brachypodium v1_2	Bradi1g04337.1	387	5e-79
Arabidopsis v10	None