barSeed - Barley Seed Development Database

Probe CUST_21569_PI390587928

Source Contig U35_27700

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21569_PI390587928	Hv_44K_v2	TCAACATAAAACATTTTGTGCATCATGCGAAGAAGAACAATGCGGACAGTAGAACAAAAA	590	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.813	2.200	1.146	0.776	0.274	0.311
Raw	214.749	404.970	183.834	196.751	24.886	29.623

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32100.1	710	3e-22	121 - 176	100	56 / 56	plus	None
JLOC1	JLOC1_21000.1	166	5e-22	112 - 166	100	55 / 55	plus
Harvest21	ABC50218	648	5e-23	3 - 58	100	56 / 56	minus
Harvest35	U35_27700	662	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_27700 662 Hv_44K_v2
CAACAAGAAGATGGGCCGAAGGATGACCTTCTGATCGAAGGGTGTACCGAGTTTGTGAAC
ATGTTCAAAACAGGACCATTCATTGAATTTCGGCGTCTGTATGGGGAGAAGTGTGGATTG
GATATGAAGTTTCTTGTGTTGCAGAATGCAGTTCAAGCAAAGTTGATGTCGAGATACTCC
GTGCTCCTGGCAATGGCATTAATTTGAATCTTTATGCGAAGACCAGTGGATTCAGAGAAG
TGATCCGCCTCTTTTCTGGAGTTACAGAATCGGGTTGTGGAATGAGTTTGGTCATTGGTG
TGATGAGGCACAGTTATCTTAATTTCTGTATTGAAGGATCCCCGAAAGATGGCGTTTTTT
CTCAAGAGCTGCCGTGCTGTATGTGGGAAGGTCGATTTGGTTCACGGTATCATGGAACAG
TGCATGAAGTGGTGTATCTTCATGATTCCACAAAAATTTCTGTCAAGATTAGCTGGAAGG
CTGTTGAGAGTTGATGTGGTTTGGAACGCTGAAGACTGGAAGAAGTTGTCATGTATATCC
TTATGTCATTCGCAGCGAGTTCTGTTTACGGTATTTTATTGTATGTTCCATCAACATAAA
ACATTTTGTGCATCATGCGAAGAAGAACAATGCGGACAGTAGAACAAAAAAAAAAAAAAA
AA

Homology of Contig U35_27700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None