barSeed - Barley Seed Development Database

Probe CUST_21568_PI390587928

Source Contig U35_27701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21568_PI390587928	Hv_44K_v2	CAACTAACATGTCAAACATAGTCTCGCCTCCTGACAAAGGTGGACTTCAAATACTTGGCC	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9793.4	1378	2e-24	554 - 613	100	60 / 60	plus	ABC25200
MLOC	MLOC_9793.3	4045	2e-24	3650 - 3709	100	60 / 60	plus	ABC25200
MLOC	MLOC_9793.2	4344	2e-24	3578 - 3637	100	60 / 60	plus	ABC25200
MLOC	MLOC_9793.1	4309	2e-24	3595 - 3654	100	60 / 60	plus	ABC25200
JLOC1	JLOC1_6353.4	4295	8e-25	3530 - 3589	100	60 / 60	plus
JLOC1	JLOC1_6353.3	4325	8e-25	3560 - 3619	100	60 / 60	plus
JLOC1	JLOC1_6353.2	4343	8e-25	3578 - 3637	100	60 / 60	plus
JLOC1	JLOC1_6353.1	4339	8e-25	3574 - 3633	100	60 / 60	plus
Harvest21	ABC33823	658	3e-25	501 - 560	100	60 / 60	plus
Harvest35	U35_27701	805	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (805 bp)

>U35_27701 805 Hv_44K_v2
ATTATGGTTTGATGTTGCCTTGTTGGTCCCACAGGCATCACCAGTTCTTGTCCTACGGCA
TATCGTTGTCGTCTCTAGTGCCCACTGTGAAGGTGTTGTTTATAATGGCGATAGATACAT
TATCGTGAGTGGGTCTACAGATGGTAGCATTACATTGTGGGACCTAACAGACACCATTCA
TGGCTTTATGCAACTAGTATCAGAGACGAAACCGCACATGGTCATCGACTGCCAAAAGCG
GCCCAAGACAGGAAGAGGGAGTCAGGGTGGTCGTCGTCGGTGGCGATCACTGGCAAACAG
TTCCGTGAAGAAGGGTAACGGACAGGCATTGCTCCGTAGTGAGAACAATCTGAGCGCCTC
GTGCGCTGCTGCGGAGAGTCCACATGAAACTTCAGGAGCGGGAGAAAACGAGGCCATAAA
AAACACCGAGAACACAGTTTCAAGTACCCAGTCGTGTGATATACCTGAACTGCAGCCATT
GCAGATATTGGCCGGTGTTCACCAGTCAGGCGTGAACTGCCTCCATGTTTCGGAGATGGA
GCAGCGGTCATGCTCTATTGCTGGCACGTCTTACTGCATCATAAGTGGCGGTGATGATCA
GGCGGTTCAGTGTTTTGTGTTCACATTAGCACCCCCGCAGGGCTGCTCAACTAACATGTC
AAACATAGTCTCGCCTCCTGACAAAGGTGGACTTCAAATACTTGGCCAGCACACGGTTCC
CTCCGCTCACGGATCAGCAGTGAAAGGTATCTGGACGGACGGTTCCTGGGCTTTCTCCAC
TGGGCTTGACCAGAGAATCAGATGT

Homology of Contig U35_27701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02110.2	1316	6e-95	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g77780.1	1343	2e-117
Arabidopsis v10	None