barSeed - Barley Seed Development Database

Probe CUST_21564_PI390587928

Source Contig U35_27705

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21564_PI390587928	Hv_44K_v2	TTTATATGCCTATAAGCTTTGCTTCCTCTTTGCTCTGCTGATTTCGTCCAGCCATGGCAC	47	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.578	0.568	1.452	2.615	1.162	1.417
Raw	3.513	5.678	17.576	45.511	7.288	9.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81119.1	1487	2e-24	1325 - 1384	100	60 / 60	minus	ABC32050
MLOC	MLOC_23430.1	609	3e-22	502 - 557	100	56 / 56	minus	None
JLOC1	JLOC1_53977.1	1541	8e-25	1427 - 1486	100	60 / 60	minus
JLOC1	JLOC1_16188.1	408	1e-22	306 - 361	100	56 / 56	minus
Harvest21	ABC22383	709	3e-25	48 - 107	100	60 / 60	plus
Harvest35	U35_27705	709	3e-25	48 - 107	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_27705 709 Hv_44K_v2
TGTCTCTCTCCTCCTGGTTGCTCATCGATCATAGCAACCATGTCTATTTTATATGCCTAT
AAGCTTTGCTTCCTCTTTGCTCTGCTGATTTCGTCCAGCCATGGCACCGTCGGCAATGTG
GCACCACCGAGCGCCGGATTCAGTCTGCCTGTCGTGTCCAACCAGGAAACAGCCGACGGG
CAGCTTGGCGCGAACCTCACGAGCATAGGTCCGCACATAGCACCCGTGGGGTGGCCCTTG
TACGGCGTCCTCGTCGGCGTGGGCTCCGGCCAAACCCGGCATTTCTACAAGCTCGGGCTG
GACCTCGTCGGCAATCTGACGTGGATGCAGTGCCAGCCCTGCGTGCCCGAGGTTCGGCAG
GAGGGCGCCGTCTTCGACTCTGCCGGGTCCCCTCGCTACAAGCACATGAAGGCAACGGAC
CCCATGTGTACGCCCCCCTACACCCCTTCCGTCGGCAACCGGTGCAGCTTCTACACCACC
ACCTGGAACGTCGCCGCACACGGCTACCTCGGCAGCGACATGTTCGCCTTCGCCGGTACC
GGCGCAGGAGGACACAGCACGGACGTGGACCAACTCATCTTCGGCTGCGCACACACGACG
GACGGGCTCGAGCGCCTCAGCCACGGCGTTCTCGCTGGGGCCCTGAGCTTGAGCAGGCAC
CCGATGTCGTTCCTGAGCCAGCTCACCGCGCGCGGGCTGGCCGACTCGC

Homology of Contig U35_27705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None