barSeed - Barley Seed Development Database

Probe CUST_21541_PI390587928

Source Contig U35_15743

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21541_PI390587928	Hv_44K_v2	GTCTCTGTGTGGCAGCCATTTATGATGAACCGTTATCTTTATCATTTGTAACTTTTATGT	1410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39847.1	997	2e-24	874 - 933	100	60 / 60	plus	ABC03865 ABC03867
JLOC1	JLOC1_26016.1	1106	8e-25	874 - 933	100	60 / 60	plus
Harvest21	ABC03865	1541	3e-25	1411 - 1470	100	60 / 60	plus	ABC03865
Harvest35	U35_15743	1541	3e-25	1411 - 1470	100	60 / 60	plus

Contig Sequence (1541 bp)

>U35_15743 1541 Hv_44K_v2
AAAATTTCCCACTTACCAATTCCGGCGAGACACCTCCCCCCGACGACAACTGCGGCGTGG
TATCAGCGGCCACCATGTGCGGTGGAGCGTCCCTTGAGGATGCCAAGGTTCCGGTCGTGG
CGCGGAAGGTGACTAGGGCGACGCTATGGACCGAGAAGAAGAAGCCCCGGCAGGGCGGCG
GCGGGGGCCGGCGCTTCACGGGGCTTGGTGGGTGCAGGGGACTTGGTCGGGATGACAACG
AGGAGGACTTCGAGGCTGACTTTCAAGAGTTCAAGGCCTACTCGGGGGACTCCGACCTGG
AGCTCAGGCGCAGTAGGGTGGATGAGAAGGATGACGACGACGAGGTCGTTGAGATCAAGC
CCTTCGCTGTCGTCAAGAGGCCCCTCTCCCAAGATGGCTTAAGCACCATGACTACTGCTG
GTTTTGATGGTCCTTCAGCAAAAAGGAAGAGAAAGAACCAATTCAGGGGTATCCGTCAGC
GCCCCTGGGGTAAGTGGGCTGCTGAAATCAGAGATCCTAGCAAGGGTGTTCGTGTCTGGC
TTGGTACTTTCAACAGTGCTGAAGCTGCTGCAAGAGCTTATGATGTTGAAGCACGCAGGA
TCCGTGGCAAGAAAGCCAAGGTTAACTTTCCAGAGGAACCAGCAACTCCTCAAAAGCGTC
GTGCTCGCCCTGCTCCTCCTAAAGCACCCAAGCCAAGCGCAACACAGGAACCTGCAGTCA
ACAACCTTGCCAACCCAAGTGCTTTCGTCTACCCATCTGCTGACTTTGCATCAAACCAGC
CACTTGCTCTGCCTTACAACATGTCATTTGTTCCTGCAATGAACTCTGCTGCCCCTGTTG
AAGCCTCTGTTATGAATCTGTACTCTGACCAGGGAAGCAACTCCGTTGGCTTCTCTGACC
TGGTCTGGGATTTTGACACCAAGACTCCAGATATATCACCCATTGCTCCCATTTCTACCA
CTGCTGAAGGAGCGGAATCTGCACTTGTTCAGAGTGACGCCTACAACCCAGTGGTGATTG
CTGAAGTACCTGAATCTGCACTTGTCCAGAGTAACACCTACAACTCAGTGGTGCCTCCTG
TTATGGAGAACAATGATGCCGATTCCGAGCCTTGGATGAAGTTTCTTTCGGATGATGGCA
TGGACGAGTCGATTGACAGCCTTCTGAACTTTGGTGTGCCTCAGGATGTCATTGGCAACA
TGGACCTTTGGAGCTTCGATGACATGCCCATCTGTGGAGAATTATGCTGATGATCCAAAT
CCTTTATATAGAGACAAAGGGAATAAGAGTATGGGAGATTGGGAAGCACCCTGTTGTCAC
CTTCGGCTAGCAAATGATTATGTCCAAGCTTAGATGCAAAAAAGTCGCATCTTGAGTCTC
CTTTGTAATCGACCCTTTCCCTAGTTGACTGTCTCTGTGTGGCAGCCATTTATGATGAAC
CGTTATCTTTATCATTTGTAACTTTTATGTCAGTCGCTACCATTTCTGAATGTGAACAGC
ATGGATTTGTGTCCAGTTTGCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54160.2	366	5e-115	protein\|AP2 domain containing protein, expressed
Brachypodium v1_2	Bradi3g60120.3	395	6e-94
Arabidopsis v10	None