barSeed - Barley Seed Development Database

Probe CUST_21539_PI390587928

Source Contig U35_15745

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21539_PI390587928	Hv_44K_v2	TTAAGGCGAAGACAATCAGCGAAATCCACACAGAGGCTGAAAAGAACCTTGGATTACGTC	494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368865	2908	2e-24	1484 - 1543	100	60 / 60	plus	ABC08240 ABC08241
MLOC	MLOC_74063.3	3619	2e-24	2872 - 2931	100	60 / 60	plus	None
MLOC	MLOC_74063.1	2459	2e-24	1712 - 1771	100	60 / 60	plus	None
MLOC	MLOC_74063.4	1664	2e-24	917 - 976	100	60 / 60	plus	None
MLOC	MLOC_74063.2	2331	2e-24	1584 - 1643	100	60 / 60	plus	None
JLOC1	JLOC1_49343.1	2347	8e-25	1600 - 1659	100	60 / 60	plus
Harvest21	ABC08239	1297	3e-25	463 - 522	100	60 / 60	plus
Harvest35	U35_15745	1047	3e-25	495 - 554	100	60 / 60	plus

Contig Sequence (1047 bp)

>U35_15745 1047 Hv_44K_v2
CCCTTCTGAAGAACCAGGCGGTAAAGAGATCACATTCAAACGTGTGCTATTGAACAATTG
TCAGGAAGCTTTTGAAGGTGCTGACAGCCTGAGGGTTGAGATTGCAAGTTTGACTGGCCC
TGACCAAGAGATGGAGAAAAGGGACAAAGAAAGGATCTTCAAACTTAGAACACTTGGAAA
TATTCGTCTAATTGGTGAGCTACTCAAGCAAAAGATGGTTCCTGAGAAGATAGTTCATCA
CATTGTCAAGGAGCTACTGGGGTCTGATAAAAAGGCTTGTCCTGACGAGGAACATGTCGA
AGCCATTTGTCAGTTCTTCAATACGATTGGTAAACAGCTTGATGAGAGCCCAAAGTCTCG
CCGAATCAATGATACCTATTTCGTCCAGATTAGGGAGCTAGTAGCGAACCCTCAGTTGAC
CCCACGTTCTAAGTTCATGGTCCGGGATTTGATTGATCTCCGTTCTAACAACTGGGTGCC
TCGACGTGCGGAGATTAAGGCGAAGACAATCAGCGAAATCCACACAGAGGCTGAAAAGAA
CCTTGGATTACGTCCAGGGGCCACAGCAAACATGAGGAATGGCCGTAATGCACCAGGTGG
GCCTCTTTCGCCTGGAGGTTTTTCAGTGAACCGGCCAGGAACAGGAGGTATGATGCCTGG
GATGCCTGGATCTAGAAAAATGCCTGGGATGCCTGGGTTAGATAATGATAACTGGGAAGT
TCAGCGTTCTAGATCAATGCCAAGAGGCGATCCGCTTCGCAATCAGGGTCCGTTGATTAA
TAAGATTCCATCATCTATTAACAAGCCATCACCCATCAACCCGAGGCTTCTTCCTCAAGG
CACTGGATTTTGGTCTCTCGGCGACGGCGGCCTAACTCTTGCTGGAGCCTGGGAATGAAC
AAGGCTTTTTTTTTTCTTCTTCTGTCAAATGGGATGTTTTTGTGTCTCCTCCAATGTTAT
TATTTCTTTTCAGTTCTTACACAATTTGTAACAATGTACTGTGGTTTTGGAGTATTCTGT
CGGTTACAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_15745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42140.1	794	2e-133	protein\|eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed
Brachypodium v1_2	Bradi5g14687.1	793	1e-146
Arabidopsis v10	AT5G57870.1	780	6e-102	\| Symbols: eIFiso4G1 \| MIF4G domain-containing protein / MA3 domain-containing protein \| chr5:23439755-23443433 FORWARD LENGTH=780