barSeed - Barley Seed Development Database

Probe CUST_21538_PI390587928

Source Contig U35_15746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21538_PI390587928	Hv_44K_v2	GTTACAATATATCGTGTCAGCATTGTAGGAGTCGAAAACTGAATCTAAGATTATTTTGGC	1235	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72521.1	544	2e-24	261 - 320	100	60 / 60	minus	ABC08240 ABC08241
JLOC1	JLOC1_48236.1	401	8e-25	118 - 177	100	60 / 60	minus
Harvest21	ABC08240	637	3e-25	20 - 79	100	60 / 60	minus	ABC08240
Harvest35	U35_15746	1335	3e-25	1236 - 1295	100	60 / 60	plus

Contig Sequence (1335 bp)

>U35_15746 1335 Hv_44K_v2
GGCCTGGAGCTAGAAAAAGCCTGGGATGCCTGGGTTAGATAATGATAACTGGGAAGTTCA
GCGTTCTAGATCAATGCCAAGAGGCGATCCGCTTCGCAATCAGGGTCCGTTGATTAATAA
GATTCCATCATCTATTAACAAGCCATCACCCATCAACCCGAGGCTTCTTCCTCAAGGCAC
TGGAGCACTGATTGGCAAGAGTGCGCTCTTGGGAACCGGTGGTCCACCATCCCGCCCTTC
CACCCTTACTGCTAGCCCCACTCCTTTAGCAGCTCAAACTACATTATCACCAAAACCATC
AAGTGCAACTCCAGCTTCTGTACCTGTTCCTGACAAAGCAGCCAGTTCTGCCAAGGTGGT
CCCTGCTGGTCTTCAGAAGAAGACAGCATCTCTTCTTGAGGAGTATTTTGGTATTCGTAT
TTTGGATGAAGCACAACAATGTATCGAGGAGTTGCAGAGTCCTGATTACCACCCTGAGAT
TGTTAAAGAAGCTATCAATCTTGCTCTGGATAAAGGTGCCAGTTTTGTTGACCCTCTTGT
TAAGCTTCTGGAGCATCTGTACACCAAGAAAACTTTCAAAACTGAAGATCTGGAAAATGG
TTGCTTGCTATATGGGTCGTTGTTGGAAGATATTGGTATTGACCTTCCTAAAGCTCCAAC
GCAGTTTGGTGAAGTGGTTGCTCATCTGATTCTGTCGTGTGGCCTGAGATTTGAAGCTTT
AGAGGGGATTCTAAAGGCAATGGAGGACACCTTCTTCCGCAAAGCAATATTCAACTCCGT
GACGAAAACCCTAGAAGCAAACCCAGCAGGTCAGGCCATATTGAGCTCACATGCTGCCGT
AGTCGAAGCGTGCAACAGCCTCTTGATATAACAGCTCTTGGCCAGCTCAACTTCTCAGGT
GCTGTGTCTAGTGAAAGGCAGCGTATGGTGTATTCTCTATAGCTTAGGTGTTTCACCGCA
GAGGAACTGGGATGTGAGCAACAGCCAGTTTTGAGCTGTATATTTTTGCGAGGTTACATG
AGTGTTGATTATTGTTTGGAGGAAAGGAAGAAGCCATGGATTTTGGTCTCTCGGCGACGG
CGGCCTAACTCTTGCTGGAGCCTGGGAATGAACAAGGCTTTTTTTTTTCTTCTTCTGTCA
AATGGGATGTTTTTGTGTCTCCTCCAATGTTATTATTTCTTTTCAGTTCTTACACAATTT
GTAACAATGTACTGTGGTTTTGGAGTATTCTGTCGGTTACAATATATCGTGTCAGCATTG
TAGGAGTCGAAAACTGAATCTAAGATTATTTTGGCTTATTAAAAAAAAAAAAAATTCCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_15746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42140.1	794	2e-117	protein\|eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed
Brachypodium v1_2	Bradi5g14687.1	793	1e-132
Arabidopsis v10	AT2G24050.1	747	1e-65	\| Symbols: eIFiso4G2 \| MIF4G domain-containing protein / MA3 domain-containing protein \| chr2:10225500-10228456 REVERSE LENGTH=747