- Probe CUST_21533_PI390587928
- Source Contig U35_27721
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21533_PI390587928 | Hv_44K_v2 | CAGACCTGTTGCAAAGAGAGGAAATCAAAACATTGTTCAGTGCTGATTCTATTTCTCGAG | 162 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.211 | 0.247 | 0.946 | 1.465 | 1.247 | 1.451 |
| Raw | 83.573 | 124.453 | 513.512 | 1163.823 | 368.982 | 477.577 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_43648.2 | 1731 | 8e-25 | 436 - 495 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43648.1 | 1850 | 8e-25 | 555 - 614 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52962 | 718 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37099 | 393 | 3e-25 | 286 - 345 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01745 | 1856 | 3e-25 | 352 - 411 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27721 | 222 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus |
Contig Sequence (222 bp)
>U35_27721 222 Hv_44K_v2 GAGAGATTGTCATCCATGCTCAGCGCTTGCAGGAACAGCTAAAGACTCAACCAGGGTCTC TACCTTTTGATGAGATCCTCTATTGTAACATTGGGAACCCACAATCTCTTGGTCAGCAAC CAGTTACATTCTTCAGGGAGGTTCTTGCCCTTTGTGATCATCCAGACCTGTTGCAAAGAG AGGAAATCAAAACATTGTTCAGTGCTGATTCTATTTCTCGAG
Homology of Contig U35_27721 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |