barSeed - Barley Seed Development Database

Probe CUST_21532_PI390587928

Source Contig U35_27722

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21532_PI390587928	Hv_44K_v2	GAAGTTCATTGATGACTGAACATGTACTTCCCCTATGATATCTAAATACCGTATGGGAAT	1009	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.065	2.149	1.134	0.743	0.403	0.301
Raw	236.157	387.349	176.629	181.282	36.633	28.081

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC23678	1072	3e-25	4 - 63	100	60 / 60	minus	ABC23678
Harvest35	U35_27722	1072	3e-25	1010 - 1069	100	60 / 60	plus

Contig Sequence (1072 bp)

>U35_27722 1072 Hv_44K_v2
GTACGCGGCGCTCGCCGACTGCGCCGTCGCGTCGCGCAGACCCTGGAGGGACTTCCCCTT
CGCGGGGCTCCTCTGCCTCGTCGGCGCGCTGCTCGCGCTCCTCGTCGACCTCTCCGCCTC
GTCGCACCTCGAAGCGCACGGCCTCCACCAGCAGCCGCAGCAGCAGGAGGGCCAGCCCTA
CGCCCCAATCCCCACCACCAAGAAGGCCCCCGTCTTCGAGCTCACCGGAGAAATGAGCCC
TAGGAAACGCGCTTTCCTGGACGAGAGTGACCGCGACGACCCGGCGCCGCGCGACGACAA
GAATGGCGGCGACCCGGACCGGGACGACGTGGCGCTCTTCGGGCCAAAGAAAGGCGGCCG
GTTGCCCCGCAGCGATGAGCCCCTGGCCCCTATTGTCGGCTGCCATGGCGCTGGGCATGA
GGTGGTGGAGGTCGGGGAGGGGGAGGAGGAGGAGGCGAGGAAGAAGCAGAAGATGGTGTC
CAAGGTGCTGGAGATTGGGATAGTGTTCCACTCGGTCATCATCGGGGTGACCTTGGGGAT
GTCGCAGGACGTCTGTGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTCTT
CGAGGGGATGGGCCTCGGCGGCTGCATCGCACAGGCTGGTTTCGGAATGGCAACAGTGGG
TTACATGTGCATAATGTTCTCAGTGACAACACCATTGGGAATACTTCTTGGGATGGCTGT
CTTCCATATGACTGGTTATGACGATAGCAGTCCAAACGCCCTAATAATTGAAGGCCTTCT
TGGTTCACTCTCTGCCGGAATCCTTGTCTACATGGCGCTAGTCGACCTCATTTCTCTTGA
CTTCTTCCACAACAAGATGATGTCGTCATCTCTGAAACTGAAGAAGGCCTCTTATATTGC
ATTGGTGCTTGGATCTGCTTCTATGTCGATATTAGCTCTCTGGGCATAGGTCATAGCAAA
ATGTGTAGAGGGATCATTCTCAGATTCCAACATCTGGCATAGGTTTTGTGAAGTTCATTG
ATGACTGAACATGTACTTCCCCTATGATATCTAAATACCGTATGGGAATTGA

Homology of Contig U35_27722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g07210.1	396	3e-121	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi2g34560.1	400	5e-126
Arabidopsis v10	AT2G30080.1	341	9e-73	\| Symbols: ZIP6, ATZIP6 \| ZIP metal ion transporter family \| chr2:12838730-12840112 REVERSE LENGTH=341