barSeed - Barley Seed Development Database

Probe CUST_21531_PI390587928

Source Contig U35_27723

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21531_PI390587928	Hv_44K_v2	CGCCGTGTTGCGTATGCAAATATAACATATGACCGTATCCAATAGATGCCACAAATTATA	502	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.653	1.010	1.241	1.033	0.871	1.353
Raw	4.186	12.293	14.549	19.781	4.368	9.387

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC23056	576	3e-25	503 - 562	100	60 / 60	plus
Harvest35	U35_27723	576	3e-25	503 - 562	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_27723 576 Hv_44K_v2
GTGCAATCATTCAAGGTTAACATACGATGGAGTTGATATAATGGGCGAAAGACTGGCTGA
AGAGGTACACCAAGTTGTCCAGAGGAAAGGAAATTTGCGGAAAGTCTCTATTGTTGCTCA
TTCACTTGGTGGATTGATTTCAAGATATGCAATTGGAAGACTCTATGAAGAATCAACAAG
CGAAGAGCCATGCCTTAATATGGAGAAGCATTCTGACAAAGAAAATATAAGCAGGGGTGG
TAAAATAGCTGGCTTAGAACCAATGAACTTCATTGCGTCTGCTACACCACACCTGGGCTC
AAGGTGGAATAAACAACTGCCCTTCCTTTTCGGTGTTCCACTTTTGGAACAAACCGCTGC
AGAAACTGCACATCTTATAGTTGGGAGAACGGGTAAACACTTGTTTCTCTCGGACAGGGA
CGACGGGAAGCCTCCACTTCTCGTGCGAATGGTTGAAGATTGCGATGATGGAAAATTCAT
GTCAGCTTTGCGCTCTTTTAAGCGCCGTGTTGCGTATGCAAATATAACATATGACCGTAT
CCAATAGATGCCACAAATTATACTTTTATATATTTT

Homology of Contig U35_27723 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54580.1	464	1e-97	protein\|serine esterase family protein, putative, expressed
Brachypodium v1_2	Bradi3g53670.1	425	1e-109
Arabidopsis v10	AT4G25770.1	418	9e-68	alpha/beta-Hydrolases superfamily protein \| chr4:13117821-13119982 REVERSE LENGTH=418