barSeed - Barley Seed Development Database

Probe CUST_2152_PI390587928

Source Contig U35_26987

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2152_PI390587928	Hv_44K_v2	GTCATCCTCGCCACAGGGTTCATCCACATACTCCCCGACGCGTTTGAGAAACTCACGTCG	319	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60720.1	1709	2e-24	540 - 599	100	60 / 60	plus	ABC16352
JLOC1	JLOC1_39622.1	2088	8e-25	572 - 631	100	60 / 60	plus
Harvest21	ABC23456	378	1e-24	320 - 378	100	59 / 59	plus
Harvest35	U35_26987	379	3e-25	320 - 379	100	60 / 60	plus

Contig Sequence (379 bp)

>U35_26987 379 Hv_44K_v2
CTGATCTCCCTCGCGTCCTCGTCCAGTCGCGTGCATCACGACAGCCAGCCTAGCCATGAA
GCCTAGCGTTGCCGCCCTCCTCGTGTCCTTCGTGGCGCTGCTCTTGGTCGCCGCCGTGCG
GGGCGATGACGACGGCTGCGGGTCGCCGGAGTCGGCGGGGCAGGACCGGGCGCGGGCGAA
CCATCTCAAAATCGCGGCCTTCTTCTCCATCCTGGTCTGCGGGGCGCTGGGCTGCTCCCT
GCCCGTGCTGGGGCGGCGCGTGCCCGCGCTCCGGCCCGAGGGCGACGTCTTCTTCCTAGT
CAAGGCGTTCGCGGCGGGGGTCATCCTCGCCACAGGGTTCATCCACATACTCCCCGACGC
GTTTGAGAAACTCACGTCG

Homology of Contig U35_26987 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None