barSeed - Barley Seed Development Database

Probe CUST_21529_PI390587928

Source Contig U35_27725

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21529_PI390587928	Hv_44K_v2	ACGACGAGTTCTGGTACTCCAACCCGCCGGACCTATACATCCAGGAGAACAGTCTCACGA	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64938.2	1972	3e-21	823 - 882	97	58 / 60	plus	None
MLOC	MLOC_64938.1	2550	3e-21	1076 - 1135	97	58 / 60	plus	ABC42269
JLOC1	JLOC1_42680.1	2477	2e-21	909 - 968	97	58 / 60	plus
Harvest21	ABC42268	257	3e-25	166 - 225	100	60 / 60	plus
Harvest35	U35_27725	616	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_27725 616 Hv_44K_v2
CCCAGGTCGTGCTCTCCTTCTCCGCCGCCTGCGCCGGCGACCAGTACGACCGCGTCGCCG
CCGTCTGGCTCGACGGCTCCGAGCTCCTCCGCACCACCACCGCCGAGCCCACCCCCGAGG
GCGTCAGCTGGACTGTGCGCAAGGAGGTCACCCGCTACTCCGCCCTCCTCCGCTCCCCGC
CCGCCGGCGTCCTATCGGTCATGCTCGAGAACCTCGTCAACGACCAGTACACCGGCGTCT
ACAACGTCACTGTCTCCCTCGAGTTTCATGGAATTCCGGCTTACCTCTCCCAGGTAAATC
CCCCCTCCTCCGATGCTGGTGTCGCACACCCCAGCCCCGCGACACCGACGCTGCCGGACT
CGTACTTCCAGCCGGCGGACCTGGTCCTGCCCATCTCGGAGGCCACCGGCGACGGCGGCT
ACTGGTTCCGCATACAGACTCGTCCGACTCGCGCTCCAAGCTCGTGACCATTCCGTCGAG
CACCTACCGTGCGGCCCTCGAGGTGTTCGTGTACGGTTACTCCAACGACGAGTTCTGGTA
CTCCAACCCGCCGGACCTATACATCCAGGAGAACAGTCTCACGACCCCGAGGGGTAACGC
GGCTGTACCGAGAGGT

Homology of Contig U35_27725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32820.1	613	1e-80	protein\|peptide-N4-asparagine amidase A, putative, expressed
Brachypodium v1_2	Bradi2g26240.1	629	1e-89
Arabidopsis v10	None