barSeed - Barley Seed Development Database

Probe CUST_21513_PI390587928

Source Contig U35_15752

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21513_PI390587928	Hv_44K_v2	GCAATGTTGAAGATCGAAAGAGAGTCGAGACACAACAAAATGAATCAACTCTATTATTGA	1823	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.530	2.594	2.219	0.920	0.376	0.308
Raw	120.210	322.023	228.850	150.247	20.832	18.753

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12715.1	1515	8e-25	40 - 99	100	60 / 60	minus
Harvest21	ABC06622	1880	3e-25	1763 - 1822	100	60 / 60	plus	ABC06622
Harvest35	U35_15752	1941	3e-25	1824 - 1883	100	60 / 60	plus

Contig Sequence (1941 bp)

>U35_15752 1941 Hv_44K_v2
GGTACCGGTCTCGAATTCCTCGAGCACTGTTGGCCTACTGACACCGCTCTTGATCGATCT
CCTGCTCTCGTCTCTGCCAAAAACATCCAGTCATCCGTCCTACGGTCCCAATGGCCCACG
TCCTCGCCGCCGCGGAGCCCCTCACCCTCCTCAAGCGCCCGACGCCGCAGAACGACGGCT
TCGGCGACGACAACGGCAGCACGGAGGAGAAGGCACTCAAGGCGCGCCGCCGGGAGTCCG
ACCCGGCGGCGGCACTGGCCGCGGCGCGTCACGAGTTCGGCGAGCACGGCGGCGTGAACA
TGTCCATCGAGGCCTCGGCCACGTTCACCGTGATGGAGCCGGACACCATGCGCCGGCTCT
TCACGGGGGAGCTGGGCCCGGAGCGCGGCGACCTGTACATCTACAGCCGCCACTTCAACC
CGACGGTGCTGGCGCTGGGGCGGCAGATGGCCGCGCTGGAGGGGACCGAGGCCGCCTACT
GCACGGCGTCCGGCATGTCGGCCATCTCGTCCGTGCTCATGCAGCTGGTGGGCGCCGGCG
GGCACGTCGTGGCGTCGCGGTGCCTGTACGGCGGCACCCACGCGCTGCTGTCCCGGTTCC
TGCCGCGCACCTCCGGCGTGAAGGCGACGTTCGTGGACGCGGACGACGAGGCGGCCGTGC
GCGCGGCCATGAGGCCGGGGGAGACGCGGGTGGTGTACGTGGAGACGATGTCGAACCCGA
CGCTGGCCGTCGCCGACATCCCGATGCTGGCGCGGGTGGCGCACGAGGCCGGGGCCAAGC
TGGTGGTGGACAACACCTTCACCCCCGTCGTCGTCACGCCGGCGCGGCTCGGCGCAGACG
TCGTCGTCCACAGCGTGTCCAAGTTCATCAGCGGCGGCGCCGACATCATCGCCGGTGCGA
TCTGCGGGCCGGCGAGCCTGGTGAACGCGATGATGGACCTGCAGGACGGGGCGCTGATGC
TGCTGGGCCCGACGATGAACGCCAAGGTGGCGTCGGAGCTGGCGGGGCGCCTCCCGCACC
TGCCGCTGCGGATGCAGGAGCACTCGCGCCGCGCCGCCGAGTTCGCGGCCCGGATGCGCC
GCCAGGGCCTGCGCGTCACCTACCCGGGCCTCCCCGACCACCCGCACCACGCCCGGCTGC
GCGCCATGGGCAACCCGGGCTACGGCGCCGGCGGCATGCTCTGCCTCGACATGGGCACCG
AGGAGCGCGCCAACCGCCTCATGTACCACCTGCAGAACACCACCCAGTTCGGCCTCATGG
CCGTCAGCCTCGGCTACTACGACACGCTCATGTCCTGCTCCGGCAACAGCACCAGCAGCG
AGATGGACCCCGAGGACCGCGCCCGCGCCGGCATCTCCCCGGGCCTCATCCGCATGTCCG
TCGGCTACAACGGCACCCTGGAGCAGCGCTGGGCGCAGTTCGAGCGCGCGCTCGCGCTCA
TGCAGCAGGAGACCCCCGCCGCCGCCGCCACCGCCAAGTACGGCAAGGCCGTCTGACCAC
CAAAGCGTTGATGCCTGCTCATGGTGTATATTATATATATATACTCCTCCTATCACTAGC
TAAGTAAGTACTGTCAAGCACCATCTGGATCTGTTCAGAACTTCAGATGGATGGATGTGC
CAGTGTGTTAAGCAGCACGCCTGATTAGACTTTGCTGAGCGTACTGCGAGATGCGTCATC
CATGTATCGGAATAAATTAGCGTGATTTTCTGTCGAAAAAAAAAAAAAAAATGCCATCCC
GATTTTACTTTTCGAAAAAAAAAAAAGATTCTGCATTTACCGTGGCTTGTTGCTCTCCAT
GCCAACTCCAGAATACTGTTTCGGCAATGTTGAAGATCGAAAGAGAGTCGAGACACAACA
AAATGAATCAACTCTATTATTGATGATTGAGTACAAGTATATATAGCCTTCAGTGGATGC
ATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15752 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37340.1	465	0.0	protein\|cystathionine gamma-synthase, putative, expressed
Brachypodium v1_2	Bradi3g30860.1	459	0.0
Arabidopsis v10	AT1G64660.1	441	2e-177	\| Symbols: ATMGL, MGL \| methionine gamma-lyase \| chr1:24028977-24030537 FORWARD LENGTH=441