barSeed - Barley Seed Development Database

Probe CUST_21511_PI390587928

Source Contig U35_15754

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21511_PI390587928	Hv_44K_v2	GATCTGTACCGTTGTACTTGTATCCTATGCGTTCTGGTTATATATTGTCAGATTTTGAAA	2286	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.184	1.133	1.093	0.966	0.324	0.384
Raw	1350.083	2040.796	1725.910	2419.655	282.861	364.666

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16677.1	2438	2e-24	2339 - 2398	100	60 / 60	plus	ABC03992
JLOC1	JLOC1_11506.1	2339	8e-25	2071 - 2130	100	60 / 60	plus
Harvest35	U35_15754	2359	3e-25	2287 - 2346	100	60 / 60	plus

Contig Sequence (2359 bp)

>U35_15754 2359 Hv_44K_v2
CGTCTCCCTCCCTCCCTTCTATTTCTATTAAGAAGCAAGCAGGGCGCCACTCAGATCTCT
CCGCCCCTTCCTCGCCTCGTGCCCCTCCCCCCCCCTCTCGTCAACGCCGCCCCGCCGCCC
GAGGAGAGGAGAGGAGAGGACGAGCCATGGCATCGCCGGCCGCGCGCGCGGCCTCGGCGC
TCCTCCTCCTGCTCGCCCTCGCCGTGGCCGGCGTCCTCTCCGACGGCTCCGACCACCGCT
ACAAGCTCGGCGACCCCGTCCCGCTCTACGCCAACAAGGTCGGCCCCTTCCACAACCCCA
GCGAGACGTACCGCTACTTCGACCTCCCTTTCTGCTCCCCGGAGAAAGTGAAGGAGAAGA
GCGAGGCCCTAGGCGAGGTCCTCAATGGGGATCGGCTGGTCGACGCGCCCTACAAGCTTG
ATTTCCGCACGGATCATGACTCCAAGGCGGTTTGCCCCAAGAAGCTTACCAAGGAGGACG
TGGCCAAGTTCCGGAACGCCGTAGCCAAGGACTACTACTTCCAGATGTACTATGATGATC
TCCCACTGTGGGGTTTTATTGGTAAGGTCGAGAAGGGAGGCAAGCCGGACCCGAGCGAGT
GGAAGTATTACCTCTACAGGCACATTATCTTTGACATCCTCTACAATAACGACCGTGTTA
TTGAGATCAATGTGCACACTGACCAGAGTGCCCTGGTTGACCTGACGGAGGACAAGGAGG
TTAATGTGGACTTCCTTTACACTGTCAAGTGGAAGGAGACACCTACCCCGTTCGAGAAGA
GGATGGAGAAGTATTCCAGCTCCTCCAACATGCCGCATCACTTGGAGGTTCATTGGTTCT
CCATTATAAATTCTTGTGTTACGGTCCTCCTCCTCACAGGGTTCCTGGCAACAATCCTCA
TGCGAGTTCTGAAGAATGATTTTGTGAAGTACGCACATGATGAGGAAGCAGCTGATGACC
AAGAAGAGTCTGGATGGAAGTATATTCACGGTGATGTCTTCAGGTTCCCCAAGAACAAGT
CATTGTTTTCGGCTGCTCTTGGCACTGGAACTCAACTGTTTGCTCTAACAACCTTCATAT
TCCTGCTTGCACTTGTTGGAGTATTCTACCCTTACAATCGTGGTGCCCTTTTCACTGCAT
TGGTCGTCATCTATGCACTCACCTCAGGAATTGCTGGTTACATTGCAACCTCTTTCTATT
GCCAGCTAGAGGGAACAAACTGGGTGAGGAACTTGCTGTTAACAGGATGCCTGTTTTGTG
GACCTCTCTTCCTGACATTCTGTTTCTTGAACACTGTTGCTATTGCTTATAGTGCAACAG
CAGCATTGCCATTCGGCACAATCTGTGTCATTGTGCTGATCTGGACCTTAGTCACATTCC
CTCTACTAGTTTTGGGAGGCATTGCTGGTAAAAACAGCAAGAGTGAATTCCAAGCTCCTT
GCCGTACCACCAAATACCCTAGGGAGATTCCTCCACTTCCTTGGTACCGGACAACAGTTC
CGCAGATGGCTATGGCTGGATTTTTGCCTTTCAGTGCTATATATATCGAGCTCTACTACA
TCTTTGCTAGTGTTTGGGGCCACCGAATTTACACAATTTACAGCATTCTCTTCATAGTCT
TCATCATCCTCCTTATCGTCACTGCCTTCATCACTGTTGCGCTGACATACTTCCAGCTTG
CTGCTGAAGACCATGAGTGGTGGTGGAGGTCATTCCTGTGCGGAGGATCAACTGGATTTT
TCGTCTATGGCTACTGTCTGTACTACTACTATGCACGATCGGATATGTCTGGCTTCATGC
AGACATCTTTCTTCTTTGGGTACATGGCGTGCATCTGCTATGCATTCTTCCTGATGCTGG
GTATGGTGGGCTTCCGTGCCGCCTTGTTCTTTGTTCGGCACATATACAAGTCGATCAAGT
GTGAGTAAGGTGCTGTTGGAGGATGAAGAGCAGCAAGCAGAGTTGTACTCCTTTTTGGTG
CCGCTAAGAAGTCCCAGTATAGAAAAGGTTAGCTCTCGCGTGCAACAGGAAGCAACTAGA
AGAGATTGGCATGTTTGAGATTAGGCCATTATTCATAGGAAGAGGTAATGAACCTATAAA
TTTCTTGTCATTGTGCGACTGGTGTGATGAACCAACCGTCTTTCCTTTGATCCATCCCCA
TGTATTATGTGACGTCCAGACAGTATTACTTTGTTGAACCATAACAACCTATATAAATTT
CTGTGCAAGTTCCTATGGCAGAATAAAACGTGTAGAGATGATGCCTCAAGAAGGGCATGT
CCAGTCGATCTGTACCGTTGTACTTGTATCCTATGCGTTCTGGTTATATATTGTCAGATT
TTGAAAAAAAAAAAAAAAG

Homology of Contig U35_15754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g13380.1	596	protein\|transmembrane 9 superfamily member, putative, expressed
Brachypodium v1_2	Bradi1g68750.1	594
Arabidopsis v10	AT2G01970.1	592	Endomembrane protein 70 protein family \| chr2:452197-454819 REVERSE LENGTH=592