barSeed - Barley Seed Development Database

Probe CUST_214_PI390587928

Source Contig U35_19572

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_214_PI390587928	Hv_44K_v2	GGTGCATCACCAAGACGGTTAGAGATTTTGGTAGCATTTCTCCTTACGATGGTTTCTTTC	546	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.349	6.842	1.406	0.527	0.128	0.251
Raw	403.421	569.518	103.283	67.568	3.455	11.128

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45571.1	904	8e-25	592 - 651	100	60 / 60	plus
Harvest21	ABC11219	606	3e-25	547 - 606	100	60 / 60	plus	ABC11219
Harvest35	U35_19572	606	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_19572 606 Hv_44K_v2
TTTAAAACAGGCAGAGACAGAACGAGCCCGATCACCATTCCCCGCCGCCCCCAGCCACCT
CCAGCCGAGGGAGCCCCTAACCCTAGCCTCTAGTCCGGCAACCGTTCGCGCGGGATCATC
GGCGGCGGCGATGGCGTCGTTCTCGGAGGCGCCCCCGGGGAACCCCGCGTCCGGCGAGAA
GATCTTCAAGACCAAGTGCGCCCAGTGCCACACCGTCGACAAGGGCGCCGGCCACAAGCA
AGGGCCTAACCTGAATGGTCTGTTTGGGAGGCAGTCTGGAACAACTCCTGGATACTCTTA
CTCTACGGCTAACAAGACCATGGCTGTGGTTTGGGAGGAGAAAACACTCTACGACTACCT
GCTTAACCCGAAGAAGTACATCCCTGGAACTAAGATGGTGTTCCCTGGACTGAAGAAGCC
TCAGGAGCGTGCTGATCTCATCGCATACCTGAAGAGTGCCACAGCTTGAAAGGGCTTTTG
CTCTGCTGCCACGTTCCTGAAGTTAATAAAAATAGACATTGCCATGGTGTCACTCTGGTT
TGACGGGGTGCATCACCAAGACGGTTAGAGATTTTGGTAGCATTTCTCCTTACGATGGTT
TCTTTC

Homology of Contig U35_19572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34770.1	113	1e-69	protein\|cytochrome c, putative, expressed
Brachypodium v1_2	Bradi2g57160.1	113	8e-71
Arabidopsis v10	AT4G10040.1	112	5e-68	\| Symbols: CYTC-2 \| cytochrome c-2 \| chr4:6277083-6278281 FORWARD LENGTH=112