barSeed - Barley Seed Development Database

Probe CUST_2149_PI390587928

Source Contig U35_38962

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2149_PI390587928	Hv_44K_v2	ACCGATCAATCGAAGAATTCCCCATCTCAGGGATTCATCTCCACTGATGGTGTCATCAAT	400	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249432.1	2035	2e-24	412 - 471	100	60 / 60	plus	None
MLOC	MLOC_13771.2	1226	2e-24	453 - 512	100	60 / 60	plus	None
MLOC	MLOC_13771.3	1227	2e-24	454 - 513	100	60 / 60	plus	None
MLOC	MLOC_13771.5	1694	2e-24	452 - 511	100	60 / 60	plus	None
MLOC	MLOC_13771.1	1769	2e-24	620 - 679	100	60 / 60	plus	None
JLOC1	JLOC1_9355.1	1777	8e-25	638 - 697	100	60 / 60	plus
Harvest21	ABC34953	536	3e-25	401 - 460	100	60 / 60	plus
Harvest35	U35_38962	536	3e-25	401 - 460	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_38962 536 Hv_44K_v2
GAAATCAGAGACCACGAGACAGAAGGCAAGTACGCTACGCACAGTCAGAGGTGGCTGGGT
GGAAAAGACAAGGAAGAAAAACAAGGGGCGCTCTTTGGTTTCAATGGGTTTGATCAGCGG
AGGGGTGTTCTTCAAGATCTTGGCGTTCCTCTGCTTCATCAGATTATCTCAAGGAAGAAA
CCATTCCGCATCACCGGATCTCCCTCCCCTCCGGAAGGCAAGCAGTTTCTCCAAAATCCA
GCATGAGGCGTATGACTACATCATTATCGGCGGAGGCACGGTCGGATGCCCATTGGCCGC
AACGCTGTCGAAGAAGTACAAGGTGCTCTTGCTTGAGAGAGGTGGATCTCCATATGGCAA
CCGCAACATCTCATACCTTGAGAACTTCCACATTTGCTTGACCGATCAATCGAAGAATTC
CCCATCTCAGGGATTCATCTCCACTGATGGTGTCATCAATGCCCGAGCAAAGGTTCTAGG
TGGAGGAACATGTATCAATGCCGGCTTCTACAGCCGAGCCAACCTAAGATTTGTGC

Homology of Contig U35_38962 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31030.1	585	2e-79	protein\|HOTHEAD precursor, putative, expressed
Brachypodium v1_2	Bradi3g35310.2	584	5e-84
Arabidopsis v10	None