barSeed - Barley Seed Development Database

Probe CUST_21498_PI390587928

Source Contig U35_5414

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21498_PI390587928	Hv_44K_v2	TGTTCCAAAGTGAAAAACTTGGCACTTGCTGTTTTTTCAATGGTATTTTGCGGGAAAAAA	1276	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.365	1.545	1.293	0.860	0.357	0.406
Raw	317.358	541.457	402.411	411.729	60.879	75.491

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356224	3167	2e-24	3090 - 3149	100	60 / 60	plus	ABC13334 ABC24730
JLOC1	JLOC1_25110.1	1279	8e-25	1162 - 1221	100	60 / 60	plus
Harvest21	ABC13334	1347	3e-25	1277 - 1336	100	60 / 60	plus	ABC13334
Harvest35	U35_5414	1365	3e-25	1277 - 1336	100	60 / 60	plus

Contig Sequence (1365 bp)

>U35_5414 1365 Hv_44K_v2
GTTCTCTGTTGCATCCCTTCACAATATACCAATAGTTTCAGTGAAGAAAATTTGATAAGA
GATAGCAGGTTTGGTAAAGTATATCTGGCGGAACTTCCTGATGGAGAGATTTTAGAAGTT
TTGAAGATCGACATTGATAACTCAAGAGTACCAGTTGATGTCTTTCTAGAACTAGTTGTG
AACATTTCAGAACTAAGTCATCCTAATATACTTGGGCTTGTGGGATATTGTGCGGAGTTT
GAGCAGCGGCTACTTGTCTACGAGCATTGTAGTAAGATGACCCTACATGATGAACTCCAT
TATGTTGATGAACCCAGCAACGCATTGTCATGGAACGCCCGTCTCCAAGTTGCCGTGGAA
GCAGCAAAGGCATTACAATATCTTCATGATGGCCGTCAACCACCGCTTGTACATCAAAAT
TTTGAACCATCTGTTGTTCTCCTTAATAGCACTTTGGCAGTTCAAATTTCTGAGTGTGGA
CTTGCATCGCTGTCTCAGGTGTCTGGCAGTTTGCGTGCCCTATTCCATTATGAAGCCCCC
GAAGTGCATGAATCCAGATCATTCAGTGATCGAAGCGACGTTTACAGCTTTGGCGTCGTT
ATGTTGGAACTTCTGACAGGACGTGAACCTTATGACAGTTCCCGTCCACGTTCTGAGCAA
CATCTGGTGCGATGGGCCTCTACTCAGCTTTATGATATTGATGCCATATCAAAGATGGTA
GATCCTTTGATTAGAGGACAATGTTCTGAAAAGGCTTTGTCGCGTTTTGCTGATGTCATT
GGCAGCTGTATTCAGCCTGAGCCAGAATTCAGGCCACCAATGTCCGAAGTTGTCCAAGCC
CTAACTCGTATGGTCAGCGACGCGGCAAAGGCTTCCATGTAAGTGCCTTCCTGAGATGAG
GAAGAATGTCGAAGCCTGTCACAGAAAATTCAATTAGGAGCCTGATGAGCGTGCCATTAG
GAGAGCTTCTGGCCAGATTCATGGCTCGAGTTATATTTGCTTACTTGCAAAGATGTCTTT
GATCGGCAATGATGCAGTAGTAGGTTGGTTGAATTCAACTGGTGAATTTATCGGTTGGTG
ATGTGCAGAGGTCTGCATTTCATTTTCCTGTAGAAGCTGTTTGTCCTTGATAGGCCCTTA
GACTAGCCAACAATGCGTCTCTGGTCGATTCATGCTTGTGAAACTTGTACCTATCTGATT
TTTATTTTGCCATATTATTTAGTCTCTAGTGTCAACATCTTTTGATTCCTAGTTCCAGAT
GGTTCTCATTCGCAATTGTTCCAAAGTGAAAAACTTGGCACTTGCTGTTTTTTCAATGGT
ATTTTGCGGGAAAAAAACTTGGCTCTGCTAAAAAAAAAAAAAAAA

Homology of Contig U35_5414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37810.2	778	4e-166	protein\|STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g24567.1	782	5e-179
Arabidopsis v10	AT4G22130.1	703	7e-90	\| Symbols: SRF8 \| STRUBBELIG-receptor family 8 \| chr4:11723733-11727331 FORWARD LENGTH=703