barSeed - Barley Seed Development Database

Probe CUST_21492_PI390587928

Source Contig U35_5420

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21492_PI390587928	Hv_44K_v2	ACGCATGTGGCCTGTTTGCAAGGTGTATGTACGTATGAAATAAACTTGTCGACTAAAAAA	904	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.533	1.658	2.455	1.539	0.637	0.593
Raw	130.284	615.875	797.352	779.935	113.241	116.551

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354087	2364	3e-21	2302 - 2355	100	54 / 54	plus	ABC22781
MLOC	MLOC_36758.1	2337	3e-21	2214 - 2267	100	54 / 54	plus	ABC22781
JLOC1	JLOC1_23712.1	2254	2e-21	2130 - 2183	100	54 / 54	plus
Harvest21	ABC22781	404	3e-25	334 - 393	100	60 / 60	plus	ABC22781
Harvest35	U35_5420	1022	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_5420 1022 Hv_44K_v2
GGCACGGCCGCCCCAGGCCCCAACGCGTGCTACGGCGAGTCGGAGCCCGTCGGCCTGACG
GACGTCGTCGTCGGCCAGCACTACGAGGTCGTCATGACCACATTCGCAGGGCTGTACCGG
TACAGGCTGGGCGACGTGGTGCAGGTGGCCGGGTTCCACAACGCGACGCCCAAGCTCAAG
TTCGTGTGCCGGCGGAACCTGGTGCTGTCCATCAACATCGACAAGAACAGCGAGCAGGAC
CTGCAGCTGGCCGTGGACGCCGCCGCCACCAAGTTCCTCGCCGCCGAGAAGCTGGAGGTG
GTGGACTACACCAGCCACGCGGACATGTCGTCGGACCCCGGCCACTACGTCGTCTTCGTC
GAGCTCAACGCCGCGGCGGCGGACGCCAGCGCCGACGCGCTGCAGGGGTGCTGCGACGAG
CTAGACCGGTCCTTCGCCGACCCAGGGTACGTCGGGTCGCGGCGGTCGTGCGCCATCGGC
CCGCTGGAGCTGCGGGTGCTGCAGCGGGGCACCTTCCACCGGGTGCTCCGCCATTACCTC
TCGCTGGGCGCCCCCGTGAGCCAGTTCAAGTCGCCGCGCTGCGTCGCCCGCTCCAACGCC
GGCGTCCTCCAGATCCTCGCCGCCTGCACCGCCAAGGTCTTCTTCAGCGCCGCCTACGAC
TGACGCAGCTGCGTGTCGTGCCTCGTCTGTGTGTAAGATGTCTCATGAAACGTACGTACG
TAGCTGCGATGCAGGATCATGTGGTTACGGGGTACATGCATGATGCTGGGAAGAGCAGTA
CAGAGTTGTCCGCAGGTGAAGTTGCGATGTGTCTGAATGGCAGCGATGTGTGTCTGTTTG
TGGTACGTGCTGTTGCAAAGTGTGGCCACCGGCCAAAAGTGTACGTGTCTACGGGTTCAG
TCTCACGCATGTGGCCTGTTTGCAAGGTGTATGTACGTATGAAATAAACTTGTCGACTAA
AAAAAAAAAAAAAAATCGAGCGGCCGCTCGAGCATCATCGAAAGGGCCCAATTCGCCCTA
TA

Homology of Contig U35_5420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12160.1	592	2e-109	protein\|OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
Brachypodium v1_2	Bradi2g07227.1	592	5e-120
Arabidopsis v10	AT2G46370.4	586	1e-73	\| Symbols: JAR1 \| Auxin-responsive GH3 family protein \| chr2:19034233-19036369 FORWARD LENGTH=586