barSeed - Barley Seed Development Database

Probe CUST_21490_PI390587928

Source Contig U35_5422

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21490_PI390587928	Hv_44K_v2	GGTGTGCATGTAAACTCCAATCTGTCTCCGAATCTTGATCTTAACTGGTTAAATAGATGA	989	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367953	1287	2e-24	1207 - 1266	100	60 / 60	plus	ABC48531
MLOC	MLOC_56471.2	3196	2e-24	1253 - 1312	100	60 / 60	plus	ABC48531
MLOC	MLOC_56471.4	3556	2e-24	769 - 828	100	60 / 60	plus	ABC01810 ABC01811 ABC48531
MLOC	MLOC_56471.1	3781	2e-24	994 - 1053	100	60 / 60	plus	ABC01810 ABC01811 ABC48531
JLOC1	JLOC1_36525.1	2578	8e-25	994 - 1053	100	60 / 60	plus
Harvest21	ABC48531	151	5e-23	40 - 98	98	58 / 59	minus	ABC48531
Harvest35	U35_5422	1087	3e-25	990 - 1049	100	60 / 60	plus

Contig Sequence (1087 bp)

>U35_5422 1087 Hv_44K_v2
CCTCAAGCGATCACGGAGAGGAGAAGAGTAGAACCACAGGCAGACGAACCCCTCGAAGAG
CAGCTCTGAGCTCTGCGGCTTGCGCTCCCGAATCCGCAGCCCTTCCCCGCTTCGATCGGA
GACGCAGGGGAGGTGCCGGATCGAGCTTCGCGGTCGGCATGGTGCCCAGGGACATGGTGA
ATGCCCCCGCCGAGAGGCTACACATCCAAGGGTCTGTAGTGAACAAGAAGTGTGAGAAGA
AGGTGCCAAAGAAAATCCACAAGTCAGAGAGGGAGAAGCGTAAGCGAGGCACGCAGAATG
ACCTCTTTAATGAGCTGGGAGCCATGCTAGAACTAGACAGGCAGAACAACGGGAAGGCAT
GTGTATTGGGTGACACTACACGGATACTGAAGGATTTAGTTTCACAAGTGGAATCTCTTC
GGAAGGAGAATACCACACTGAAGAATGAATCTCACTATGTTGTGTTGGAGAGAAATGAAC
TCCGTGATGATAACAGTATGCTTCGCAATGAAATCCTGGAGCTTCAGAACAAGCTTAGGA
TGGGTCTGCAAAGCAACCCTATTTGGAGCCAGGATACTACAAGATCAGCCGTCGCAGTAC
CTTATCCCACAAGAGGAGTGTTCCCAGTACAGCATTCACCACATCCACCAGTCATCACCT
CGACGGCACTTTCTCTGCAACCTGTAATCACTGAGCAATGCTATGTTGCCCCACCACGAG
AGCTACAGCTCTTCCCGGAAGTTTCATCTGCATCCACTGAAGACAGTGAACTGTCACAAG
ACCAGGGGATTTCCAATAGTGTAACACGGCCTCAGGCACGGTACCCTACACCAGTGGTGA
TGTCGCCAGTGAACGAATTCTCAATCCTTCCAAGGATGGGAGAGGAGCAACAATATAGTA
GTGGTACTAGTGAGGAGGTTTAAGTACATAACACAATTTGCTTCATCGTTTGAGAAGTTT
CTTTAGTGTGAGTAACAGATACATATGAAGGTGTGCATGTAAACTCCAATCTGTCTCCGA
ATCTTGATCTTAACTGGTTAAATAGATGATAATAAAAATTGCATTACACCTAAAAAAAAA
AAAAAAA

Homology of Contig U35_5422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43530.2	266	4e-98	protein\|helix-loop-helix DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g20560.2	266	1e-119
Arabidopsis v10	None