barSeed - Barley Seed Development Database

Probe CUST_21479_PI390587928

Source Contig U35_5433

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21479_PI390587928	Hv_44K_v2	CATGTTGTTGACCTTGACATTTATGAGTACCATAGCAAATAGAATGCCTTGTTCACAAAA	1411	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.334	0.327	0.824	1.926	1.343	1.920
Raw	195.540	293.991	673.288	2465.830	602.309	932.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34316.1	1705	7e-23	1536 - 1592	100	57 / 57	plus	ABC11494
MLOC	MLOC_34316.2	1115	7e-23	946 - 1002	100	57 / 57	plus	ABC11494
MLOC	MLOC_34316.3	1061	3e-22	1006 - 1061	100	56 / 56	plus	ABC11494
JLOC1	JLOC1_22112.2	1752	4e-23	1511 - 1567	100	57 / 57	plus
JLOC1	JLOC1_22112.1	1241	4e-23	1000 - 1056	100	57 / 57	plus
Harvest21	ABC11494	1484	3e-25	1412 - 1471	100	60 / 60	plus	ABC11494
Harvest35	U35_5433	1484	3e-25	1412 - 1471	100	60 / 60	plus

Contig Sequence (1484 bp)

>U35_5433 1484 Hv_44K_v2
GCAAAAGTGGAGGGAAAGAAAGAAATCCGCAGCCTAAGGGGGAGGCAGCTGATTACAATC
CAGTCCAATCCGATCGCCTCCCGAGCAGACCCGAGCGGAGCGGGCGGGAGGAGGAGGAGG
TTTAGCTAAGGTTCTCGCCTGCGGTCGCATCGATGCGGAGGTTCCAGGAGTCCGTCAAGG
CCCTCGAGGCCGACATCGAGCACGCCAATGCGCTGGCGTCCGAGTTCCTGAGGGACTACG
ACGGGTCGTTCATCCAGATGCGGATGGCCTACAGCGCCGTCGCGCATGTCCTCGTCCAGT
GGACCGACTGCAGACTCGCCAGCGCGCTCGGCCTCCTCAAGATTATGATTTACAAGATGT
ACGCGGAGGATCGCACCACGACCCTGCCAAGTTGGGAGAGGGAGGCCAGCATCAGAGAAT
TCTACGGTATTATATTCCCGTCGTTGCTTCAGCTGCCAAGCGGGATCACTGAACTGGACG
ACAGGAAGCAAAGGAGGCTGTGCATCGACAAGTTCAAGAGAAGGGATGGCGATTTCTCTC
AGGTGGATTTGGAGAGGGAGGTCGAGTGCGGGATTTGTCTCGAGGTGAACGCTAAAATCG
TGCTACCCGACTGTACGCACTCCTTGTGCTTGAGGTGCTTCGAAGAATGGTATGAAATTC
CCTCTTCTCCCTCATTCGATTGCCTGCAAAAGTCATTGATTCAATCATTTGCACGGAATT
TTGTATTGTTGGCTTATACATGTTGCAATTATTCTGTGTTACAAGTGCGCGGAAGTATGT
AGTCAAGTAGTTCATCTCCGACGCACGCTTTATTCTACTGATCTACTAATTAACAACCTG
TTGCCATTACCAGAACTAACTACAATCTGCTTCGTTTTGGTTACATTTCATGACCCTCAG
AAGAAAACGGCGAACTTTTGTAGTTGAACAATAAGTTCCATACATACAGATTATACCGAA
ACAGAGCTCCAAGATTTATTCAAATTATGAGACACTGATACATACACAAAGCTGCATCAT
ATGTTCATCAGGTTCTGTCAGTAAAATTGCAATGTTCAGCTCAGTGCTTTAATTGCCTCA
GCAGATTTGCTTCAGTTCCTAGATGTCATATTGTGTTTGTTTGTCATCGAGCAAAACAAC
TCCATCCATGCTCTTCCTGCCTAACTTGTTAATGTTCTTCATTTTTATTTGACCACTTGA
TATGTTTGATGACGATAGCAAGGTCAACTCTCCTCGCAGGAATGCTAAATCAAAGTCGTG
CCCCTTTTGCCGCGCCTGTCTCCAGAAGGTGAAGCCGAGCAGTCTGTGGGTGTACACCGA
TAAACGTGATGTTGTAGACATGGATGCGTTGACTAGGGAAAACATTAGGAGACTGTTTAT
GTACATAAATAAGCTACCACTTGTAGTCCTCCATGTTGTTGACCTTGACATTTATGAGTA
CCATAGCAAATAGAATGCCTTGTTCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_5433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g30850.2	237	1e-91	protein\|zinc finger, RING-type, putative, expressed
Brachypodium v1_2	Bradi3g27700.1	237	1e-97
Arabidopsis v10	AT5G01520.1	242	4e-60	RING/U-box superfamily protein \| chr5:206797-208399 FORWARD LENGTH=242