barSeed - Barley Seed Development Database

Probe CUST_21466_PI390587928

Source Contig U35_5446

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21466_PI390587928	Hv_44K_v2	GTTGTGTGAGTGTGTGTTTTTGCAGCGCAATCCTTGAAAGAAATGAACTTTTACATAATT	1227	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.736	5.414	1.375	0.751	0.502	0.447
Raw	61.502	127.697	26.617	23.086	2.984	3.059

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249287.1	1333	2e-24	1229 - 1288	100	60 / 60	plus	ABC02967
JLOC1	JLOC1_8155.1	1342	8e-25	1222 - 1281	100	60 / 60	plus
Harvest21	ABC13090	1249	3e-25	1189 - 1248	100	60 / 60	plus
Harvest35	U35_5446	1313	3e-25	1228 - 1287	100	60 / 60	plus

Contig Sequence (1313 bp)

>U35_5446 1313 Hv_44K_v2
ACCAAGCAACACTTGAGCTAAACCATATCCTCTCCCAAGCTAGCTCGAAGAAGCAACTTC
AGCAGCAGCAATGGCGAAATCTTTCACCTCACTAGCGCTACTTAGCGCACTGGTTATGCT
CTCGCTTTTTGTGAGCCCCATTGCTTGCTCCCGCAAGCTCCCCAAGCCTGCAATGAAGGT
CCACAAGAACCACACCGCTGCTACCCCCTCGTCGTTTGCCGCTTATGGCTCCGGTGGCTG
GTCAGCCGGCGGCGCGACGTATTACGGCGCCCCCGACGGCGACGGAAGCGACGGTGGCGC
GTGTGGCTACCAGAGCGCTGTCGGGAACCGGCCCTTCTCGTCGATGATCGCCGCCGGGAA
CCCATCGCTCTACAGAGGGGGCAAGGGCTGCGGAGCTTGCTACGAGGTTAAATGCACCGG
TAACCAGGCATGCTCCGGCCAGCCGGCGACCGTCGTCATCACCGACGAGTGCCCCGGCGG
GGCCGCCTGCCTCGGCGAGGCCGCCCACTTCGACATGAGCGGCACCTCCATGGGCGCCAT
GGCGAAGCCTGGCATGGCCGACAAACTCCGGGCCAGCGGTATCGTCAAGATCCAGTACAA
GAGGGTGCCATGCAAGTACCCTGGCATGAACATTGCCTTCAAGGTGGACCAGGGCTCCAA
CCCCTTCTACCTGGAGGTGCTGATCGAGTTCGAGGACGACGACGGCGACCTCAACACCGT
CGACCTCATGGAAGCCAACTGCGGCACCTGGACGCCCATGGTGCAGAACTGGGGCGCGCT
GTATCGCCTCAACTCCAACACCGGCAAGCCGCTGCGCGGGCCCTTCTCGCTCCGGCTCAC
CTCCGACTCCGGCAGGAAGCTCGTCGTCAACAACGTCATCCCCGTCAGCTGGAAGGCCGG
AGCCACCTACCGCTCCTTGGTTAACTACCCCTAAGTTGGCTAGTAACCAAGAAGTACAGA
GTAATTTAGAACCGTGGGTTAATTTCTACTGCGGGGATTATAAATATTTATACGTATATG
CGTCCGGGAATGGCCGGAGGCTTGTGTCAGAAGAGGAAGAGTAGGCCATGCTAATATCGT
GCTAGCTCTTCCCTCAATGGCCTCTCAGCGCTCCCCTAGTGATGCGTGTCGTCGATTTGT
CTGTATTTTGTTTCTCTTCCTCTGTTTTGTTGTCGAGGAGAAAAGCTTGTGGTGCAGTGC
AACTAATGTTGCACGCCCATGTACCAAGTTGTGTGAGTGTGTGTTTTTGCAGCGCAATCC
TTGAAAGAAATGAACTTTTACATAATTTTTGTACTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44108.1	293	4e-123	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g50750.1	293	2e-141
Arabidopsis v10	AT2G45110.1	259	7e-70	\| Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 \| expansin B4 \| chr2:18599575-18601237 FORWARD LENGTH=259