barSeed - Barley Seed Development Database

Probe CUST_21465_PI390587928

Source Contig U35_5447

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21465_PI390587928	Hv_44K_v2	CCATTCGTCCATGGATCCAAAATTTAATCAAACTTTGTACACAATTGACCAAGTTTATGG	1064	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69571.1	1627	6e-24	1 - 59	100	59 / 59	minus	ABC11969
JLOC1	JLOC1_46107.1	1696	8e-25	1569 - 1628	100	60 / 60	plus
Harvest21	ABC11969	1161	3e-25	38 - 97	100	60 / 60	minus	ABC11969
Harvest35	U35_5447	1161	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_5447 1161 Hv_44K_v2
GCAGGAGTTCTCCCATCTCTTCGCCGCGTTCAGCCTCGGCGACTTCATCCCGTGGCTCAG
CTGGGCGGACCAGGGCACCAACGTGCGCGCCCGCGCTGCGCGCGCCGCCCTCGACGAGTT
CATCGATTTTATCATCGACGAGCACGTGGAGAGAGGTAAGAACCCCGACGACGTGGACGC
CGACATGGTGGACGACATGCTCGCGTTCCTGTCTGAGGCGAAGCCGAAGGAGGCCGATGG
CGACGACCTGCAGAACACGCTCCGCCTCACCCGTGACAACATCAAAGCCATGATCATGGA
CGTGATGTTTGGTGGGACGGAGACGGTGGCATCCGGGATTGAGTGGGCAATGGCAGAGAT
GATGCAAAGCCCCAACGAGCTTCGTCGGCTGCAGGAGGAGCTTGCTGACGTGGTGGGCCT
CGACCGAAATGTAGATGAGTCGGACCTCGACAAGCTCCCCTTCCTCAAGTGCGTAATCAA
GGAGACGCTTCGACTACACCCGCCCATCCCGATTCTCCACCACGAGAACGCTAAGGATTG
TGTGGTCGGTGGCTATTCAGTACCCCAGGGCTCAAGTATCATGATCAACGTCTTCGACAT
TGGTCGAAACGCCAAGGTGTGGAAGGACGCCGACATGTTCCGACCGTCGAGGTTTATGGC
AGTGGAAGGAGAGGCCGCAAAGGTGGATTTCAAGGGCAACTGCTTCGAGTTCCTGCCGTT
CGGGTCTGGCCGCCGCTCGTGCCCTGGGATGGCGCTTGGCATCTACTCACTGGAATTTGC
TGTCGCCCAACTCGCCCACGGGTTCAACTGGGCGCTGCCCGATGGCATGAAGCCGTCGGA
GCTCGACATGACCGACATCTTCGGACTCACCGCGCCGCGCGCCAGCAGGCTCTGCGCCGT
GCCAACGCCCCGGCTTTCGCACCCTTGGGTCTCCGACGTTGATGCCACGCACAAGGCGTG
ATGTCGTGTTGTATGCGCACGGGAAAGTACATTCATCCTGTGACACAATAAAGATGTTTC
ACCCGGTTCAGGATGACACAATATCAGCGTATTAGACAACGGGTCCATTCGTCCATGGAT
CCAAAATTTAATCAAACTTTGTACACAATTGACCAAGTTTATGGATACTTTTAGATCCTG
CATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36848.1	531	3e-151	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g30590.1	538	1e-161
Arabidopsis v10	AT4G36220.1	520	4e-120	\| Symbols: FAH1, CYP84A1 \| ferulic acid 5-hydroxylase 1 \| chr4:17137584-17139619 REVERSE LENGTH=520