barSeed - Barley Seed Development Database

Probe CUST_21464_PI390587928

Source Contig U35_5448

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21464_PI390587928	Hv_44K_v2	GGCTATTCAGTACCCCAGGGCTCAAGTATCATGATCAACGTCTTCGACATTGGTCGAAAC	526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364109	1851	2e-24	1296 - 1355	100	60 / 60	plus	ABC11969
MLOC	MLOC_69571.1	1627	2e-24	514 - 573	100	60 / 60	minus	ABC11969
JLOC1	JLOC1_46107.1	1696	8e-25	1055 - 1114	100	60 / 60	plus
Harvest21	ABC11970	586	3e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC11969	1161	3e-25	552 - 611	100	60 / 60	minus	ABC11969
Harvest35	U35_5448	586	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_5447	1161	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_5448 586 Hv_44K_v2
GGCATTCAGCCTCGGCGACTTCATCCCGTGGCTCGGCTGGGCGGACCAGGGCACCAACGT
GCGCGCCCGCGCCGCGCGCGCCGCCCTCGATGAGTTCATCGACAAGATCATAGACGAGCA
CATGGAGAGAGGAAAGAACCCGGACGACGTGGACGCCGACATGGTGGACGACATGCTCGC
GTTCCTCTCTGAGGCGAAGCCGAAGAAGGCCGATGGCGACGACCTGCAGAACACGCTCCG
CCTCACCCGTGACAACATCAAAGCCATGATCATGGACGTGATGTTTGGTGGGACGGAGAC
GGTGGCATCCGGGATTGAGTGGGCAATGGCAGAGATGATGCACAGCCCCAATGAGCTTCG
TCGGCTGCAGGAGGAGCTTGCCGACGTGGTGGGTCTTGACCGGAACGTGGATGAGTCGGA
CCTCGACAAGCTCCCCTTCCTCAAGTGCGTAATCAAGGAGACGCTTCGACTACACCCGCC
CATCCCGATTCTCCACCACGAGAACGCTAAGGATTGTGTGGTCGGTGGCTATTCAGTACC
CCAGGGCTCAAGTATCATGATCAACGTCTTCGACATTGGTCGAAAC

Homology of Contig U35_5448 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36848.1	531	2e-91	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g30590.1	538	8e-100
Arabidopsis v10	AT4G36220.1	520	5e-68	\| Symbols: FAH1, CYP84A1 \| ferulic acid 5-hydroxylase 1 \| chr4:17137584-17139619 REVERSE LENGTH=520