barSeed - Barley Seed Development Database

Probe CUST_21462_PI390587928

Source Contig U35_5450

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21462_PI390587928	Hv_44K_v2	ACACAGGAGATGAAGAGCGCGCATGTAGTAAAAGAGAGACCATGGGCATCCATTTTATCT	849	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.367	3.652	0.956	0.933	0.626	0.751
Raw	120.409	159.254	36.802	55.074	12.750	17.029

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46558.1	563	2e-24	382 - 441	100	60 / 60	plus	ABC12089
MLOC	AK371822	989	7e-23	866 - 925	98	59 / 60	plus	ABC12089
MLOC	AK368681	965	7e-23	884 - 943	98	59 / 60	plus	ABC12089
JLOC1	JLOC1_30137.1	578	8e-25	376 - 435	100	60 / 60	plus
Harvest35	U35_5450	912	3e-25	850 - 909	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_5450 912 Hv_44K_v2
GCCACCAGCTGAGCGGTGGGGAGAAGCGAGCGGAAGGGAGAGCCACGGACGATGGCGGGC
GTCAGCTGCCGCCTCCTCCCCTCGCCGGCGCCGACGAGGCCGCTGCGCTCCCGCCCGAGC
GTCCCCGCCGTCGGTGGCCGCGCCGCTGCCCACCGGCCGCCGGCCAGAGTGCGAACTCGG
ATCAGTTGCTGCTCCAAACCCAACAATTCGGAGGAAGAACCCGCAAGAAGCGAGTCTCCC
AGCGATGCCAAGGATGAAGAAAATATTAGCTCCAGACGACGATGTCTAGCTTGCCTGTGT
GCTGTAACATTAATCAGTGCATCGGGCCCAACGTTTTATGCGCCAAAAGGATTTGCTGCG
GATATGACGAACAAGCCTGGCATACAAAAAGCTGTGTGCAGAAATTGTGGTGGTGGCGGC
GCTATAATATGTGACATGTGTGGTGGCACAGGAAAATGGAAGGCTCTCAACCGAAAGCGA
GCAAAAGATATTTACGAATTTACAGAATGCCCAAATTGCTACGGCCGCGGGAAGCTGGTC
TGCCCGATTTGTCTCGGAACCGGCGTGCCCAACAACAAAGGACTCCTGCGGCGACCTGGC
GCCAAAGAGCTGCTGGACAAGATGTACAATGGCAAGCTATTGCCCAGCTCGTAGATACAT
AGCGTCCTCGGTACTGCATAGCCAGAAGTATAGGGCCAGCTCTTGAAAGCAGAAGATTTT
CGCGACGGTGTAATAATACTGCAATTTGAGATGCGTATTAGATCTACGGATGTAGTAAGT
TTTTTCTACAAGACACACAAGTAAAGCCTGTAGTATGATTTTGTTCAAGTGTCTGAGGCA
CACGTACGTACACAGGAGATGAAGAGCGCGCATGTAGTAAAAGAGAGACCATGGGCATCC
ATTTTATCTGCA

Homology of Contig U35_5450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g36140.1	188	3e-77	protein\|expressed protein
Brachypodium v1_2	Bradi3g37770.1	193	3e-80
Arabidopsis v10	AT2G34860.1	186	1e-60	\| Symbols: EDA3 \| DnaJ/Hsp40 cysteine-rich domain superfamily protein \| chr2:14708380-14709804 FORWARD LENGTH=186