barSeed - Barley Seed Development Database

Probe CUST_21460_PI390587928

Source Contig U35_5452

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21460_PI390587928	Hv_44K_v2	TTCGTGTGCTATACCAACTTTGTGGTTCCTTTGACGCTGGACTGATTTACTTTTTTAAGT	1050	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.720	1.494	0.946	0.924	0.445	0.436
Raw	1606.127	2156.861	1220.762	1870.315	318.325	339.111

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370070	1183	2e-24	1069 - 1128	100	60 / 60	plus	ABC11965
JLOC1	JLOC1_25378.1	927	4e-23	782 - 838	100	57 / 57	plus
Harvest21	ABC11965	1110	3e-25	1051 - 1110	100	60 / 60	plus	ABC11965
Harvest35	U35_5452	1110	3e-25	1051 - 1110	100	60 / 60	plus

Contig Sequence (1110 bp)

>U35_5452 1110 Hv_44K_v2
CTGAACTACCCCTAAACCCATCCCGTCCCCGCCGCCGCCGCCGCCGCCTTCCGCCCCCTC
TCCCCTCCAGACCCCGTACTCCTCCGCGGCTATGGACGCCGCCACCGACGGTGAGCAGAG
GCGCCTCCTCTCCATCCCCAAGGAGGGCGAGCGCGTCATCGCGCCGACGCGCCGCCCGGA
CGGGACCCTCCGCAAGGAGATCCGCATCCGCGCCGGCTACGTCCCGCAGGACGAGGTCGC
CATCTATCAGTCCAAGGGCGCCCTCATGAAGAAGACAGGGCCCGACGTGCCGCCCGGGTA
CGACCCTGCGCTCGATGCCAAGCCCAAGACGAAGGCGGCCAAGCGCAACGAGCGGCGCAA
GGAGAAACGGCACCAGGGTGGTTCAACAAATGATAAAGGGAAGAGCTTGGATATAGACGA
GCCTGATGCTGGAGAAACTGACAAGGTTCATTCCTCCAAAACTAAGCAGAGGGATACAGT
GGACAGTGTAACAGAGCACATAAGTGGCATTGCTATCTCTGAATCTCCAGTTATGGCGAC
CCCTTCCACAAATGCTGCTGACAACTTACAAACGGAGTCATCTGTTCCAGAGATAGATAA
GAAAATCCGAGCACTGAAGAAAAAGATACGGTTAGCCGAAGCACAAGTGCAAGGGGACCC
AGAAAAATTGAAGCCTGAGCAACTGGAGAAAACGAAAAAGATTGAAGGATGGCGTGAAGA
GCTGAAGCTTTTGGAGTCTACGAGGGTTCATTCTGCATCATAGACAAAGCCGACTTGGCT
CTGATGTAAACTGAGCTGTCAGCTCTGCACACCCGCTGCGGTGTTGTTGCTGACCCAAAA
TTCAATCGATCATGCTATGCTTCTCCAGTACCTACGGGTTTGCTGGAAATGCATTCCGGT
GGACGTGGGGTTTGCACAGAATGGAAGATTTTTCACCACATTTGTTGTCTCATGTAACGC
TTGTCAGTTCCAAAATTTATATCGCAATATCGGTTTGTCAAAGATCATACATTGAGGTGA
TAACTGATTGGCCATGGGATGGCTGTTGCTTTCGTGTGCTATACCAACTTTGTGGTTCCT
TTGACGCTGGACTGATTTACTTTTTTAAGT

Homology of Contig U35_5452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15560.1	222	2e-86	protein\|wibg, putative, expressed
Brachypodium v1_2	Bradi1g67410.1	228	2e-105
Arabidopsis v10	None