barSeed - Barley Seed Development Database

Probe CUST_21458_PI390587928

Source Contig U35_5454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21458_PI390587928	Hv_44K_v2	TGTTTGTTCGTTCTGTCCGTTTGCTCTCTGAAGATAACATCATATTTTTTGCCGAAAAAA	1226	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.359	2.005	0.962	0.844	0.583	0.321
Raw	26.936	53.990	26.480	35.567	7.578	4.338

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13319	1297	3e-25	1227 - 1286	100	60 / 60	plus	ABC13319
Harvest35	U35_5454	1297	3e-25	1227 - 1286	100	60 / 60	plus

Contig Sequence (1297 bp)

>U35_5454 1297 Hv_44K_v2
CAAATGCTGATACACCTCTATTTGTGCAAGATGGCATAACCCATGATTCTGCTACTATAA
CAGATGCTCCAGATGTTGCTTTACATAGTTCTGGCCCAGCATGTGCACAAGCAGTGGACG
GTCGGGAAGGGGAATTGAGTGAGATTGTTCACAGTGATATTAATGCTTTTGAGGATAAGG
AGATGCCCACTTCTGAGATTACTGGACTGGAATTGACTGAATGTGCCTCTGGTTTTCCTC
AACCAACGGAGCATGAGAATGCTGTGTCGGCCATGGGAGAAAATTCTGGCTTGCAAGAAA
ACAATGCAGGATCCTTCACGGACATGGACAACACCGGGCATGACTTTGCACTGAAGGAAA
TCAGTGATTTTGGAAGTGCAATTCATGGTGTTGACGACACAGATTTTCCACACTATGATG
ATGATGGGGACTTTGATGAGGCAATTGATCTTGATGATGATGATGATGAGCCAAATCCTG
ACGAATTCCAGTCTCATGATGCACTTAGTGGCTGGTCTTCTCGTACCAAGGGCGTTGCAA
GATATCTCAAGACTTTATTCGATGAAGAGTCTGGTCGGGGGAGAAAGAATGTTGTCATTG
ATCATCTAGTGCATGGGAAGACTCGGAAAGAAGCTTCAAGGATGTTCTTCGAGACCTTGG
TGTTGTCGACGAAGGACTACATTCAGGTGGAGCAGGTGAACCCCTTCGATTTAATAAACG
TGAAGCCAGTGTCTAAGCTCTTGAAGACAGATTTCTAGACCGAGACCGCCCTAGCAAAAG
TGGCATGGTATACATACATCTTACAATATCTGTCACAGCACCGTCAACAACATACAGATT
GGGGTTCAGCTGTTTGTTGTCGTAACTTCCCCCCATTTTCTGTTGTTTGTTGTTAAATTT
ACCCCCCTCCTTAGTATCGTGTCTCCCCGCACTAATCTGTGCCTAGCTGATCTGAAGCTG
AGCTGAAGTAGTAGGGCTTTGTTGTTGTGCTCCATGTTGGCTGGGTGTATATATGATGAT
TAGCCCTGTGTAAAGCTAAGTTTATTATGCCGTGTAATGTTGGTAGCGTCGTCGGCCAAG
AAGTTATTTGCCTGCCTGTTGTTTCCTTGAACAGTCCTTGGGAACTGTATGCATCTGGAT
CTGTTGGACTGCTTGTATTTGGAAGTTCTCCTCATCTTTCAGTACTGAATTTCACCGTCT
TTACAGAATTTGGGAAGAACTTTCTCTGTTTGTTCGTTCTGTCCGTTTGCTCTCTGAAGA
TAACATCATATTTTTTGCCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67250.1	1056	5e-89	protein\|Rad21 / Rec8 like protein, putative, expressed
Brachypodium v1_2	Bradi2g57657.1	1138	3e-109
Arabidopsis v10	None