barSeed - Barley Seed Development Database

Probe CUST_21454_PI390587928

Source Contig U35_5458

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21454_PI390587928	Hv_44K_v2	CTGATGCTTTTCCATGTGAACCCACATCTTAAATATGTGCTTAGTGCTCTCCTTAAAAAA	1303	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.529	1.227	1.239	0.861	0.367	0.368
Raw	91.846	112.701	100.449	110.200	16.295	18.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59867.1	931	3e-21	833 - 886	100	54 / 54	minus	None
MLOC	MLOC_59869.9	2045	3e-21	476 - 529	100	54 / 54	minus	ABC15074
MLOC	MLOC_59869.10	2174	3e-21	476 - 529	100	54 / 54	minus	ABC15074
Harvest21	ABC15074	729	3e-25	12 - 71	100	60 / 60	minus	ABC15074
Harvest35	U35_5458	1374	3e-25	1304 - 1363	100	60 / 60	plus

Contig Sequence (1374 bp)

>U35_5458 1374 Hv_44K_v2
ACTGCGAAGGCGTAACTGTTTCCGGGTCAAAAAGTTGAAGCAGGCAAAAATGGAGGTTGC
GACGGCGACGGAGGCGTCGGCGCCGGCGGCGGGCGGCGGGGCGAGCAGGCGGGGGCACCC
GTTCCCGTGGCTCGACGTGGCCATCTCGGAGCCCTACTACTTCCTCCACCTCATCGCCTT
CTTCTCCTACTTCGCGGCCCGCACCACGGCGCCCTCGGCCGAGGACGACGCCGAGTTCCA
CAGCCGCCTCATCCGACGGGAGATCCAGGCGGTGCTCGTCTTCCTGGTGCTCTTCACGGT
GAAGATTGTGAAGGAGGAACACTGGGAAACATTCATCGCTGATTCATTGCTCTATGCAAA
GGGCCTCTTGTTGGTGGTTACTTTTGTTATTGATTATTGGTTGACTGTCGGCTACTTACT
GGGATTTATTGTTATATATGCTATGGCTCAACAGCCACCTTATGATGGTACAGGTCATTT
AAATCAATTGACCCCGTTACAACTGGAAAGCCTGCTAACTGAAGAGCCAACAACACGATT
TTGGCTGGTTGAGTTCCGGACTTCCTTTTTAACACCATGTATACAAGCAAGCAGTGTCAT
GCCTGAACTCTCTAACATGTACTCTAACAAGAACATTTCTTTTGGATTAGTTGATATAGG
GCATTTTCCAAATGCTGCAGCGAGGTTTGGAATATCCATGTGGGATCATCTTCCCACTTA
TATACTGTTTGACAAGGCGACTGAAGTTGCTCGGCTCCCAGAAATCGGAAACGGAACAAA
AGTATTCGTGCCAAAAGTTACCAAGAAGCTTCTCTGCCAGCACTTTGATCTTGACAGGCG
ACTGATTGAATTCCTGTCTACCTAGTTGATCCATCAACTATCCCAGGTGTCTCAAATTGA
AGGTGACAATTTGGTCGAGATAAATGGACCAGACAGTTGTGTGGAAGCGAGTACTTCACG
GGGGTATCTTCCAAGCTTGTTTTATTCAATGGGTTTTGGTCGCGCGCATCCAATCCAAGG
CCAGTATACTTTGTGGCGACAAATATGTTTTCGCATCTTACTACGATCTGTCGCTTCTTG
AATTCTGGAACGTTACTGCTCCTGTACAGATCCTGTAATGATTTGCCGACTATGCTTTTG
CACTGCAGTAGTGGTCAATCCAGACACCATTCGTTTCCAAAAAAAAAAAAAAAAGTGTGC
CTCGGAATTTGTTTGGATCTCGGCACCTTTCCCAAGTGGCAGTGGCCTGCACGGTAGGCC
ATCTTGTCCCCCCTTAAACTCCATTCCATTATCTGCCACATGCCTGATGCTTTTCCATGT
GAACCCACATCTTAAATATGTGCTTAGTGCTCTCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10340.1	263	5e-147	protein\|expressed protein
Brachypodium v1_2	Bradi2g06200.1	275	3e-156
Arabidopsis v10	AT5G11640.1	253	3e-71	Thioredoxin superfamily protein \| chr5:3742008-3743703 FORWARD LENGTH=253