- Probe CUST_21452_PI390587928
- Source Contig U35_5460
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21452_PI390587928 | Hv_44K_v2 | GAAGGGAAGGATGGTACCAAGTATAAAAGTGTTCGAGAAATATATTCTGATGTTCGATTA | 546 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.982 | 1.265 | 1.654 | 1.239 | 0.694 | 0.738 |
| Raw | 36.543 | 69.871 | 85.162 | 97.257 | 19.095 | 22.834 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58253.2 | 3066 | 2e-24 | 720 - 779 | 100 | 60 / 60 | plus | ABC12111 ABC12112 ABC17204 |
| MLOC | MLOC_55782.3 | 1701 | 7e-23 | 1049 - 1108 | 98 | 59 / 60 | plus | ABC12111 ABC12112 |
| MLOC | MLOC_55782.1 | 1675 | 7e-23 | 883 - 942 | 98 | 59 / 60 | plus | ABC12111 ABC12112 |
| MLOC | MLOC_55782.2 | 1923 | 7e-23 | 1131 - 1190 | 98 | 59 / 60 | plus | ABC12111 ABC12112 |
| JLOC1 | JLOC1_37827.1 | 2141 | 8e-25 | 718 - 777 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36022.5 | 1767 | 4e-23 | 796 - 855 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36022.4 | 2015 | 4e-23 | 1044 - 1103 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36022.3 | 2019 | 4e-23 | 796 - 855 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36022.2 | 2050 | 4e-23 | 1074 - 1133 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36022.1 | 1859 | 4e-23 | 883 - 942 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC12112 | 672 | 3e-25 | 547 - 606 | 100 | 60 / 60 | plus | ABC12112 |
| Harvest21 | ABC12111 | 1275 | 1e-23 | 859 - 918 | 98 | 59 / 60 | minus | ABC12111 |
| Harvest35 | U35_5460 | 610 | 3e-25 | 547 - 606 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_5459 | 1275 | 1e-23 | 358 - 417 | 98 | 59 / 60 | plus |
Contig Sequence (610 bp)
>U35_5460 610 Hv_44K_v2 GGAGGTTCCTCTCAGATAAAGATTGGGCAGTTTGGCCGGGGCAGAGCAGACATGGGGCAT TTTATCAATTAGCCCCCGCAACCGCAGCCGCAGTGTCGCCGCTACTCGCACACGGCCGGC GGAGACGAACCCTTGATGGTGCCGGAGGACGGCGCGCAACAGGCAGCGGCCGCTGCCGCC ACGGAGCACCCCGCGGTGTCGGAGGTGGACTCGTTCCGACGCCAGGTCGACGACCTTGCC TCCAAGACCGATGTGCTGGAGAGGAGGGTGAACGAGGTGGTAGGGTTCTACGACGGCAAG AAGCATGGCAGCGCAGGGCGCAGGGCCATCGGTAGCAGCAGGTATGCGGCGAATGGTGCA AGGGACAGCAACTGCAAAGGGATGCCCGACCTCATGCGCCAGCTTGCCGGTATCATTCGC CAGATCACGTCTCATGAATGGTCAGCGCCATTTCTGCAACCGGTAGATGTTGTAGGCCTA CAACTTGATGACTATTACAAGATTATAACAAAACCTATGGATTTCTCGACCATCCAAAAC AAAATGGAAGGGAAGGATGGTACCAAGTATAAAAGTGTTCGAGAAATATATTCTGATGTT CGATTAATTT
Homology of Contig U35_5460 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g04640.1 | 361 | 4e-64 | protein|bromodomain domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g51430.1 | 372 | 4e-73 | |
| Arabidopsis v10 | None |