barSeed - Barley Seed Development Database

Probe CUST_21446_PI390587928

Source Contig U35_5466

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21446_PI390587928	Hv_44K_v2	TGGTTCCAAATCCCGATGTTCACATGTTAGTTACGCATTTTGTGTAAAATTCAAATGTTC	1118	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.943	2.188	1.213	0.826	0.364	0.401
Raw	247.530	426.365	212.396	227.026	33.684	41.992

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_9442.2	2130	2e-21	2064 - 2124	97	59 / 61	plus
JLOC1	JLOC1_9442.1	2234	2e-21	2168 - 2228	97	59 / 61	plus
Harvest21	ABC12535	1181	3e-25	4 - 63	100	60 / 60	minus	ABC12535
Harvest35	U35_5466	1181	3e-25	1119 - 1178	100	60 / 60	plus

Contig Sequence (1181 bp)

>U35_5466 1181 Hv_44K_v2
TAGCAATCTTCCTCAAGAGTGGCTGGAATCTTCACATACTGTCATCAAACATCTCCGGCC
AGTGACTTCAGTCGCAATGTTGAGAATTGCCTTCCGCATATTGGGCCCCTTATTGCCTCG
TCTAGCCTTTGCTCGACCTCTATTCATGAAGACACTGGCTTTGCTGTTCAACGTGTTGGG
GGATGTGTTTGGGAAGAACTCTCAGGCCTCGCCTCATGTGCCGGCATCAGAAATCGGAGA
CATCATCGACTTCCTGCATCACGCTGTCATGTACGAAGGTCAAGGCGGCCCTGTCCAGAG
TACCAGCAAACCTAAAGTGGAGATACTGACATTGTGCGGGAAAGTGGTGGACATGCTTAG
GCCTGACGTGCAGCATCTCCTCTCCCACCTGAAGACGGATCCAACCTCGTCGATCTACGC
GGCGACCCATCCAAAGCTAGTGCAGCAACACCCATCATAAGGTGGATGACGTAGAATAGT
GTACACGCCTGAACTGCTGGGCCTCGGCTGATCTCGCTGTACAGGCCTGAACGCCAAGCA
GTCTTAACCGGTTAACTTGCTGCCAGACCGGAACCTGGAGTTTGTCACAACGGTCAGGGG
CAGATTTCTCTATTGGATCTGTGTTGTGTAACCCATATATATGTAGCAGTGGTGTAGATT
GCGATGTTTATGATCTCCTGTAGAAGTTAACCTGTCTGTCAAAACATATGTACTGTCAGG
CTCCGTGCAGCCCTTGTGAGTGGTGGTACCAGTGCCTCTTTTCCTTTGATGCTGCAGTGC
AGGACACGGCTCGTTTGGTCGATGGTCACGGTCAGGCGTTGCCCTTCTGACACCGACCTG
AGCCGAGTAAGGAGCGCATTGCATGCTTGCAAGGTCTGTCACGGAGCAGGCGCCAAGGAC
CGATGACCCTTCTCGCCGGTGGGCATCAGACGCTGGTGTACCGTGTTCTGAACCGTGGGC
ATCGTCGGTGTCACAGTGTCCCGCAGTGTGCATGACAGCGTCTCCTCCGTTACATAGTCC
GCACTAATGTGTACTGCTGACCGCGAGCAAGTTCACCAGTGTCCGCTATGCCTCGTAAAC
ATCAGTGGTTACTCCTCTAAATTGTCAACAGTATACCCTGGTTCCAAATCCCGATGTTCA
CATGTTAGTTACGCATTTTGTGTAAAATTCAAATGTTCCGA

Homology of Contig U35_5466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49992.1	1621	9e-71	protein\|expressed protein
Brachypodium v1_2	Bradi3g56910.1	1619	2e-72
Arabidopsis v10	None