barSeed - Barley Seed Development Database

Probe CUST_21442_PI390587928

Source Contig U35_5470

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21442_PI390587928	Hv_44K_v2	AACCCATTGGGTCCAATTCTGTCAGCGGACAAGAAATTGGTCGCCGCCAAGTTGGCCGAG	534	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.574	1.190	1.080	0.921	0.422	0.396
Raw	540.360	625.354	508.141	671.897	110.605	111.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51025.1	273	2e-24	204 - 263	100	60 / 60	plus	None
JLOC1	JLOC1_32559.1	273	8e-25	204 - 263	100	60 / 60	plus
Harvest21	ABC12079	654	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_5470	650	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_5470 650 Hv_44K_v2
GGCCACCACCGCCGTCGTCGCTGACCTGCAAAGGAAGGGGAGGCCGCCGCCGGGAGGCAG
AACCCACAACCCGTACCCTAACGAGCTCCATCCATGGCGGACACCCCCGCGCAACCCGCG
CCGGCCGCCGCCGCCGCCGCGAACCCCCACAAGCGCAAGAACAAGGGGAAGGGCAACCCC
AACAAGAAGAATAAGAAGCTGAAGGGCCCCGACGACGCCACCCGCCGCCGCCGCAAGCCG
AGCGCCAAGTTCCTCAAGCTGCTCGAGAAGCGCGCCCGCGACTACAACTCCGACGACGAC
GACGACGCCGCCCAACCCCGGCCACGGAAGTCACAGCCACGACCGCCGAAGCAGCGTGAC
GCGGCCCCCGATGGTGACGGCGACGTCCAGGAGGCCCACTCGTCCGAGGAGGAGGGGGAG
GCATCCAGCTCCGGCGGGGAATCCGACGGAGAGAGGGCGGTCACCATGTTCCAGGAAGGC
TGCAGAGCTTTCCAGGTCGCCTTCACCAAGATCATGGAGAAGAAGCTCGGCGACAACCCA
TTGGGTCCAATTCTGTCAGCGGACAAGAAATTGGTCGCCGCCAAGTTGGCCGAGGAGGCG
GACGAGCACAAGTCCAAGGGAGAGGCCCGCAGGGAGAAGCGCATTGCTGC

Homology of Contig U35_5470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None