barSeed - Barley Seed Development Database

Probe CUST_21441_PI390587928

Source Contig U35_5471

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21441_PI390587928	Hv_44K_v2	GCCTTGCAACTTGTAAGGATCAGTCAAATCTAGGCCATGTTCAGAACACTGGGATTTTTT	620	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.344	0.872	1.955	2.361	0.969	0.864
Raw	59.806	245.782	472.677	877.545	129.174	123.276

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77974.1	3986	2e-24	2739 - 2798	100	60 / 60	minus	ABC19794
JLOC1	JLOC1_51973.1	1020	8e-25	904 - 963	100	60 / 60	plus
JLOC1	JLOC1_51975.1	2652	8e-25	1405 - 1464	100	60 / 60	minus
Harvest21	ABC19794	537	3e-25	61 - 120	100	60 / 60	minus	ABC19794
Harvest35	U35_5471	740	3e-25	621 - 680	100	60 / 60	plus

Contig Sequence (740 bp)

>U35_5471 740 Hv_44K_v2
GTGCAGTGCCCGCACGCCGACCACGCGCTCGGCTTCCTCGATCGCAACGCGCGCAACGCC
CACCAGTACACCTGCAGGTACAACCAGAACCACCCCGCCGCGGCCGCCCAGAGCAAGCCG
GCGTCGGCCTTCTTCCCGGGGGCGCCCTACAGCCCGCAGAGCCAGGCTCTCGGCGGGTTC
GACTTCGGCCTGCCCGTGGCCGACCAGAGATGCCTCGCCGGGCTGATGAGCATGTACGAG
ACCGGCGTGGCCGCGCACAGAGGCGCAACAAGCGACGACACCGCTCCCGGCCTGCAGATC
GGCACCGGCAACCATCTGGCGCCACGCTCGCTTGCTGACTCGAACAACCATATGCAGCAG
CAGCATCATCAGAGCGCAGCGTTCTTCATCGGCGACGACGCGCCGTTCGGCATGGCGGCG
CCGGAGCTGGGCAGGTTCGGCGCAGGGTTCGACCTGTCAGCGGCGGACTACGCCGGCGCC
ATGCAGCAGCAGCAGCCGCAGAAGCACGTTGGACCCAACTGGTTCTACTGAACAAGAACA
GCCAAGGAACCATTCCTCATTAGCATGTAGCTCTAGGCCATTAGAATTCATAAGGCTTCC
ATTCTCGATCAGTCCATGGCGCCTTGCAACTTGTAAGGATCAGTCAAATCTAGGCCATGT
TCAGAACACTGGGATTTTTTTTTCACAAATCGCACCGAAATCAAACTGTTCTTTCGTCTT
TCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None