barSeed - Barley Seed Development Database

Probe CUST_21433_PI390587928

Source Contig U35_4185

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21433_PI390587928	Hv_44K_v2	GTGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACAAACGAAACAGTTATATTGATT	981	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58812.2	1052	2e-24	984 - 1043	100	60 / 60	plus	ABC09991
JLOC1	JLOC1_38239.1	1366	8e-25	1043 - 1102	100	60 / 60	plus
Harvest21	ABC09991	1075	3e-25	982 - 1041	100	60 / 60	plus	ABC09991
Harvest35	U35_39957	774	3e-25	32 - 91	100	60 / 60	minus
Harvest35	U35_4185	1075	3e-25	982 - 1041	100	60 / 60	plus

Contig Sequence (1075 bp)

>U35_4185 1075 Hv_44K_v2
GCAACCACACATCGTCTTCTCAGAGAGCCAGAGCTATCAGATCTCGCTCACATCGCATCC
AAACGTACGTGCTTCTAAAGTTCTTCTCCAGCGCAACCACTAGGCAGTATCTTCATTCGC
ACGTCGACTGGAAATGGAAGCTACCGACAACCTCCTCATGGCCACCGAGCTCAGGCTGGG
CCTCCCCGGCACCGACGACAAGCCACAGAGGATCAACTACGTGTCGCCGCCGGCGACTCC
CAGGGGCAAGAAGCGCACCCTCGACGCCTTCGAGGCCACCGCCTCCGATGAGGACGACAA
GTCCGACGACGTCCAGACCGCACCCCCCGTGGCCAAGGCACAAGTCGTAGGGTGGCCGCC
GGTGAGGTCGTACCGGAAGAGCTGCTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAA
AGCGGACGAGACCAGCAGCAACAACGCGCCGTCCGCAGCGGCGCCGGCGAGCACCAACGG
CTCCTTCGTCAAAGTGAGCATGGACGGAGCGCCCTACCTCAGGAAGATCGACATGAGGAT
GTACAAGGGCTACAGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGG
GGCAGACGCCGGCGCTTCCAACGGCGGCGGCGCAAACCCGTCCGAGTACGCCATCACCTA
CGAGGACAAGGACGGCGACCTCATGCTTGTCGGAGATGTTCCCTTCGATATGTTCAGCGG
CACATGCAAGAAGTTGAGGATCATCAAGAGATCCGAAGCCACAGGCCTGGGATCCAAATA
ATGAAGATTTGAGAAGCAAGATGATATCATGGGCTCTCGATCTCTTTTTTTTTTCTTTTG
ACGGTTTATACTTTTTGTTCTTCGATCTGGGTTCGATCACCAAGCCAAAAGGGATGAGCT
TGGTGCATCAGAGAGCACACATGGATGTGTGCCCTTTGTTTGGGTCATTGAAGTAGGCCT
TTTTAGAAGCACAAAGGAGATGTGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACA
AACGAAACAGTTATATTGATTGTTGATCACTTATCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40900.1	198	4e-55	protein\|OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed
Brachypodium v1_2	Bradi4g02580.1	206	5e-56
Arabidopsis v10	None